Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07937 ATGGAAAATAAGCTCTACTCAAAAGTGCTTCTAGTTTTAGTTACAATTTTTCTTTCAACTTCTTACACAAACCAACTTCAGCTTCAATCTTCACAAACTCACACTCTTCTAAGAATCAAACGCCTATTAAACTTCCCTTCGATTTTAAGCACATGGAATTCAAACACTGATTTTTGCAACACAGATTCAAAAGCTTCTCTAACTGTTGTATGCTATGAAGAAACCATAACTCAGCTTCACATAGTAGGTGAAACAGCAACAACAAAACTTCTTCCAAAAAACTTCTCAATAGATTCATTTTTCGCGACACTTTCGCGAATCCCGTCTCTAAAAGTCCTCACACTAGTTTCCTTAGGGTTATGGGGTCCGATTCCCGGAAAAATCGCGAGTTTATCATCTTTGGAGATTGTTAACATGAGTTCAAATTTTCTATATGGAACTATCCCTCAAGAGCTTCCATTGCTTTCGAATCTTCAAGCACTCGATCTCGATCACAACATGTTTGATGGACATTTGCCTGATTGGTTGGACTCGTTTCCGTTGTTAACCGTTTTGAATTTGAAACAAAACTTATTCAATGGTTCGCTTCCTGATTCGTTGAGTAGCTTAACGAATATGCGAGTTCTTTCGCTTTCTGGTAACCGTTTCAACGGATCCGTGCCCGATTTGAGCCGGTTGGTTAATCTTCAAGTGTTGGAATTGGATGATAATGGTTTTGGACCTAACTTTCCTAGAATTTGTAACAAGTTGGTTACTTGCGCTCTAAGAAACAACAAGTTTAGGTCTAGTTTACCTGATAACATGAGTTCTTATTATCAACTCGAGAGATTTGACATCTCGGATAACGCGTTCGTTGGACCGATTCAGTTGGAGTTGTTTTCGCTTCCTTCGATTACTTATCTCAACATTTCGAGAAACAAATTATCAGGAATGCTTTTTGAGAATCTGTCATGTAATTCGGTTCTAGAAGAAGTTGATCTGTCTTCGAATCTTTTGAGTGGAAAATTACCGAAATGTTTAGTATCGAATTTCAACGATAGGAGTTTCTTGTATGGTGGGAATTGTTTTGAGGAAACAAATCAAAATCAAAATCAACACGAACAATCTTTCTGTCACACTGAAGCTATAGCTGTTGGAATAGTTCCTAATGAGAGAAAGAAGCATAAAAGAGTTTCTAAAACAGTTCTTTCTTTTGGGATAGTTGGTGGAATTTTCGGAGGATTTGCACTTGTTGCATTGGTTTTTAGTATTATTAGAAGAAGAAAAGGTAAAAGCATGATGATGATGAAGAATTCTCAAACAAAATTGATATCAGAAAATGCAGCTTCTGGATACACTTCAAAGTTAATCACTGATGCAGGGTACGTATCCAAAACCATGAACTTTGGAAGTGTTGGCCTGCCACCTTATAGAGCTTTTTCCCTAGAAGAGATTATGGCAGCTACTAACAACTTTGACACCACTTCTTTCATGGGTGGTGAAGGCTCTCAAGGACAGATGAATAGAGGCCAACTTAAAGAAGGTTCACTAGTTGCTATTAGAAGTGTAAAATTGACCAAAAGCTACAAGACTAAAGATTTCATGCAGCACATTGAAATGATATCGAAATTCAGGCATCACCATTTAGTTAGTGTTCTTGGACATTGCTTTGAATATTACTTAGATGATGCAAATGTCAGACGAATATTTATCGTCTTTGAGTATGTACCAAACGGATCACTCAAGAGCTGGATCTCAGATAGGCATTATAGAAAGTCTCTTACTTGGACTCAACGCATCGCGGCTGCAACTGGAGTAGCGAAAGGAATTCAATTTTTGCATACGGAGATTGTTCCTGGCGTATACTCGAACAATCTCAAAATCACTGATGTTTTATTGGATCAGAATTTTGTTGCCAAAATCAGTAGTTATAACATGCCTTTGTTATCGAAAAGTCCTAGCTTTAACAAAAGTGTAAAAAGTGAAGACAAGTCTGATATATATGACTTTGGTGTGATGCTAATGGAACTCATTCTAGGAAGGACTATAAAGTCGAGGAATGTCGAAACTTTGAAGGATTTGTTGCAAGCAAGTATAATATCAGATGATGAAGCTAGAAGAAGCATTATAGATTCGTCGATTCGTAACGCGTGTTTGGATGAATCATTGAAGACAATGATGGAGATTTGTGTGAGGTGTTTAGTTAAAGAGATGGAAGATAGGCCTTCTATAGAAGATGTTTTGTGGAATTTGCAATTTGCTTCTCAAGTTCAAGATGCATGGAGAGGAGACTCTCTTAGTAGTGATAGCTCTCCTCTTTCGCCTTTACCGTCTCGACGAATGAACTTCCATTAG 2334 0.3749 MENKLYSKVLLVLVTIFLSTSYTNQLQLQSSQTHTLLRIKRLLNFPSILSTWNSNTDFCNTDSKASLTVVCYEETITQLHIVGETATTKLLPKNFSIDSFFATLSRIPSLKVLTLVSLGLWGPIPGKIASLSSLEIVNMSSNFLYGTIPQELPLLSNLQALDLDHNMFDGHLPDWLDSFPLLTVLNLKQNLFNGSLPDSLSSLTNMRVLSLSGNRFNGSVPDLSRLVNLQVLELDDNGFGPNFPRICNKLVTCALRNNKFRSSLPDNMSSYYQLERFDISDNAFVGPIQLELFSLPSITYLNISRNKLSGMLFENLSCNSVLEEVDLSSNLLSGKLPKCLVSNFNDRSFLYGGNCFEETNQNQNQHEQSFCHTEAIAVGIVPNERKKHKRVSKTVLSFGIVGGIFGGFALVALVFSIIRRRKGKSMMMMKNSQTKLISENAASGYTSKLITDAGYVSKTMNFGSVGLPPYRAFSLEEIMAATNNFDTTSFMGGEGSQGQMNRGQLKEGSLVAIRSVKLTKSYKTKDFMQHIEMISKFRHHHLVSVLGHCFEYYLDDANVRRIFIVFEYVPNGSLKSWISDRHYRKSLTWTQRIAAATGVAKGIQFLHTEIVPGVYSNNLKITDVLLDQNFVAKISSYNMPLLSKSPSFNKSVKSEDKSDIYDFGVMLMELILGRTIKSRNVETLKDLLQASIISDDEARRSIIDSSIRNACLDESLKTMMEICVRCLVKEMEDRPSIEDVLWNLQFASQVQDAWRGDSLSSDSSPLSPLPSRRMNFH 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07937 777 Gene3D Transferase(Phosphotransferase) domain 1 569 758 - -
Vifa1g07937 777 SUPERFAMILY L domain-like 31 357 - -
Vifa1g07937 777 ProSiteProfiles Protein kinase domain profile. 486 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07937 777 Gene3D Phosphorylase Kinase; domain 1 465 567 - -
Vifa1g07937 777 SUPERFAMILY Protein kinase-like (PK-like) 464 748 IPR011009 -
Vifa1g07937 777 MobiDBLite consensus disorder prediction 755 770 - -
Vifa1g07937 777 MobiDBLite consensus disorder prediction 755 777 - -
Vifa1g07937 777 Gene3D Ribonuclease Inhibitor 250 374 IPR032675 -
Vifa1g07937 777 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 99 744 - -
Vifa1g07937 777 Pfam Protein tyrosine and serine/threonine kinase 493 741 IPR001245 GO:0004672|GO:0006468
Vifa1g07937 777 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 458 568 - -
Vifa1g07937 777 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 569 760 - -
Vifa1g07937 777 Gene3D Ribonuclease Inhibitor 29 249 IPR032675 -
Vifa1g07937 777 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 29 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07937 Vifa-Chr1 1239277519 1239280671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07937 45 770 Miscellaneous Gene Families AT3G03770 57.775 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa1g07937 PK_Tyr_Ser-Thr 2.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07937 - - gmx:100813207 1077.77