Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07931 ATGGGGAGGGAAGAAGATGTTAAGATTGGAGCAAACAAATTCTCAGAAAGAATGCATTGGGCACAGGAGCTCAGAGTGATAGTAATGGACTACAAGGAAGCACCACCAGCACCATTGTTTGAGCCAGGGGAGTTGAAGTCATGGTCTTTTTACAGAGCTGGAATTGCTGAATTTGTTGCAACTTTCTTGTTTCTTTACATCACTGTCTTAACTGTCATGGGTGTGAATAGATCAACCTCTAAGTGTGCCTCTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCACTTGTCTACTGCACTGCTGGAATTTCAGGTGGACACATAAATCCAGCTGTGACATTTGGTTTGTTTTTGGCTAGGAAACTGTCCTTGACCAGAGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTGGTGAAGGGTTTTGAGGGTAATGCTCGTTATGAGTTGTTCAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACTAAGGGGGGTGGTCTTGGAGCTGAGATTGTCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCTAGGGATTCTCATGTTCCGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACTATTCCTATTACTGGAACTGGTATTAACCCGGCTAGGAGTTTTGGTGCTGCTATAATATACAACAGAGACCATGCTTGGGATGACCATTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCTCTTGCTGCATTATATCACCAGATAGTGATTCGAGCAATTCCTTTCAAGACAAGGGGCTAA 864 0.4352 MGREEDVKIGANKFSERMHWAQELRVIVMDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSTSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYELFKGGANVVNPGYTKGGGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSFGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKTRG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07931 287 FunFam Probable aquaporin PIP1-2 37 287 - -
Vifa1g07931 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Vifa1g07931 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Vifa1g07931 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 NCBIfam MIP family channel protein 56 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g07931 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 22 282 IPR034294 -
Vifa1g07931 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07931 Vifa-Chr1 1238871341 1238872491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07931 2 286 Major Intrinsic Protein MIP AT4G23400 84.561 8.78e-168 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07931 K09872 - gmx:100796833 525.783