Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07922 ATGGGAAAGGGTAACCCTAGGGCGGTTGAAAAAGGTGTAGTAGGTCCAAATTTGAGTGTTTCATCCACCACTGTACCATCTGCACCCGTGTTTTACCCAACCGAAGATGAGTTCAAAGATCCTTTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATTGTTCCTCCTAAGAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCAGACTAAGACTCAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTCTAGTAAGAAGCTTAAGAAAAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGGTGTCAAGAGGTTTGGGGGGTATGATAAGGTCGTGGTTGGAAAGAAATGGGGGGAGGTTGCTAGGTTTGTGAAGTCTTCCGTTAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTATCGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAGTAAAGGAACGGTCGTGAGCGGTTGTAAGAAAAGTGCAGAGGTGGAGGAAGATTGTAAGAGTGATCATGGGGTGCAAGCTTCGGTGTCCAACAAGCATAACGGGATTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGATGAAAATCGGAAAGTAAAGGATGTAAATCGGGATCAGATTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAACAAATACCTCTAGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAGTTCTGGGAGATAGTGGAGGGTTCGGTTGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACGTCTATCTATGGGAGTGGTTTTCCAAATGAAACTAATCAGAAACCACAATCTATTGATGATAACTTATGGCAAGAATACTCTGCTAATCCATGGAATCTTAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAGTTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATATGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTGGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATCGTTAAATCATCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTACTAAACTCCGTCTTCTCTATCGTCATTCACTGGGTGAATTGAATGACTTGGCATTTTCAATCGACAAATATATTTCTGAAGTAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCAATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAAAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAGTTGAGATTGAGTCATCAGGACTCAAGTTTCAAGAAAATTCATATAGACTATGTTAATGAGTTACTGAGATTTAACCCTGTACCATGCAACGAGCCTCATTATAATAAATTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAAAGTGTTCCAACCTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTTAACCAAGATCAACCAGGCGTGGATGGGTAGTGTCAGAAGCTGCATCTCAGTTAGAGATTCTGCTGAGTTAGATGTTGATGTTCTTTACAAGTTAAAATCGGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCGGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAATGATGTTTTAGATAAAGTTCACAGACAGGGAGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGAAAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCATCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCCCAGGCACATGATTCTAAGATGCCACTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGGGAGAGAAGCAATTCGTCAGTTTATCGTGTGTGCTTGATGTCGCCATGCATTGGGAGGAAAAAGCTGGAGAAATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATATTTGTTATTCTTACCTTACTTAATGATGTCAAAGAAGCGTTAGCTGAAGCTAATTCTTGGTTAAGGAATTCAAAGCCATATTTATCTTCTAACCGTGAGTCGAACTCTGCGCGAAACGTTGGGGACTTGCAGTTATTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACACTTGAATTAATTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTATTTGAATTGGATAACACTGTTCATGGAATGAGCAGTGGTTTATTGTTTAAAGTGGAAGATTTGATTGCAAGAATTCAGTCTGCCATAGCATCTGGTGTATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGTGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTGGTTGATGGGGTTGAATGGCTTAGGAGAGCGTTTGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATAGGTCGTGGCAAGAGCAAGTGCATCATTTTTTTAGTCTAAGTTCTAGGGAACGAACTTGGTCATCAATATTGCAGCTCAAGGAACTTGGAGATTCCGTTGCCTTTAGTTGCTCAGAACTTGATTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATCGATAATATTGGAGCTTTTTTCCAAAATGAAAAATCGCTGCTTCATGCACTGCAGAAGATAAAACAGACTCTAGATATATCGCTCTACATATATGGCAAGTTGCAAAAACAGAAGGAACCAAACTTATGCAACTACTGCTTTGTTGATTCTCAAGATCAAGACTTCCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTCAGCGACTACACGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAAGATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAACATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACGTTTCTGTCTGTGGATTGAAGAAAAAGATCTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCATTCATCAGCTTATGTCGACGAAGATATTACCACCATCTCTGAAAATTTGATCATTGCAATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGATAGATGTGACCTTGAGCTGGCTTTAACAAAATACTTATGGAAGATTCAAGTCAATATATTGTTAAGTGGTGCAGTTAAGCCCACTATTGAAGAGATTCAGAAACATCTGAAAGAGGGAATATCTATGGAAATATCACCCAAGGATCACTATATGCTGAAACTTACAAATGTGAAGTGCTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGATATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTGTAGCGGAAGGTGAAAACTTGCCCGTTGATGTAAATGAGGAACTCAAGATGTTGAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATCTACATTTGCCCTGCGTGCAACCCATGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACCCCTTCTCCCAGGCACAATAACCCTAGAAAGAAACGGAAGAGAGATGTGCCCAGCCACACTTGCAAGGTGTATGCGCCCAGGAATGAAGATGATAGTAATTTTAGGTTAGATGGGATAGAATGTCTAAGGTGGAAAATTCGCAAGTCATTTAAAAGAGTAACTAAAAGACGTGTTGAACTTCAAAGTCTTTCTCCATTTATATGCATAAAACGGTAA 5529 0.4012 MGKGNPRAVEKGVVGPNLSVSSTTVPSAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPKNWKPPFALDLDSFTFQTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHSSKKLKKKIVFEGEDLDLCKLFNGVKRFGGYDKVVVGKKWGEVARFVKSSVKISDCAKHVLCQLYREHLYDYEIYCNRISKGTVVSGCKKSAEVEEDCKSDHGVQASVSNKHNGIVDGLKVKDRKVKDENRKVKDVNRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDNLWQEYSANPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGSFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTTKLRLLYRHSLGELNDLAFSIDKYISEVKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVKSLTEAQKWAEGIKDCVTKIELRLSHQDSSFKKIHIDYVNELLRFNPVPCNEPHYNKLKEYAKEARLLVQDIETALSKCSNLSELELLYSRACGIPIYVKGTKKLKRKISLTKINQAWMGSVRSCISVRDSAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQCRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLDKVHRQGDHHNAVDELKSILEKGFSLKIQVDELHLVEIELKKANCRQKASQAHDSKMPLEFIQQLLKEATMLGIEGEKQFVSLSCVLDVAMHWEEKAGEILSSEASISDFEDMLRASENIFVILTLLNDVKEALAEANSWLRNSKPYLSSNRESNSARNVGDLQLLVSQSKHLKVHLEERRTLELILNNCKKWECEAHSLLDDAQCLFELDNTVHGMSSGLLFKVEDLIARIQSAIASGVSLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVVEGLSHSAVSGALLKVLVDGVEWLRRAFEGISRPCNSRRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHRSWQEQVHHFFSLSSRERTWSSILQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGAFFQNEKSLLHALQKIKQTLDISLYIYGKLQKQKEPNLCNYCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLSDYTCSYCEILKGKSQDSNGSSLLRFEKHIELNILVELLSDAERFCLWIEEKDLLNQLIEKAFACKSGLREIVNHSSAYVDEDITTISENLIIAIKASKVAGVYDQGDRCDLELALTKYLWKIQVNILLSGAVKPTIEEIQKHLKEGISMEISPKDHYMLKLTNVKCLGLHWVELAKKISNDSGALGLDKVYELVAEGENLPVDVNEELKMLRARCMLYCICRKPFDPGRMIACYQCSEWYHFDCMKLSCTQDIYICPACNPCTGLPTNHDRLTTGKLEEPKTPSPRHNNPRKKRKRDVPSHTCKVYAPRNEDDSNFRLDGIECLRWKIRKSFKRVTKRRVELQSLSPFICIKR 1842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07922 1842 SMART JmjN_1 27 68 IPR003349 -
Vifa1g07922 1842 Pfam PHD-finger 253 300 IPR019787 -
Vifa1g07922 1842 MobiDBLite consensus disorder prediction 1762 1788 - -
Vifa1g07922 1842 FunFam Predicted protein 359 562 - -
Vifa1g07922 1842 ProSiteProfiles JmjC domain profile. 391 557 IPR003347 -
Vifa1g07922 1842 Pfam JmjC domain, hydroxylase 424 540 IPR003347 -
Vifa1g07922 1842 Gene3D - 78 198 IPR036431 GO:0003677
Vifa1g07922 1842 Pfam PLU-1-like protein 1150 1407 IPR013637 -
Vifa1g07922 1842 Pfam PLU-1-like protein 955 1197 IPR013637 -
Vifa1g07922 1842 Pfam PLU-1-like protein 901 995 IPR013637 -
Vifa1g07922 1842 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1034 - -
Vifa1g07922 1842 SUPERFAMILY FYVE/PHD zinc finger 247 301 IPR011011 -
Vifa1g07922 1842 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vifa1g07922 1842 Pfam jmjN domain 29 62 IPR003349 -
Vifa1g07922 1842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1692 1750 IPR013083 -
Vifa1g07922 1842 Pfam ARID/BRIGHT DNA binding domain 99 185 IPR001606 GO:0003677
Vifa1g07922 1842 CDD ARID 97 185 - -
Vifa1g07922 1842 ProSiteProfiles Zinc finger PHD-type profile. 251 301 IPR019787 -
Vifa1g07922 1842 ProSitePatterns Zinc finger PHD-type signature. 254 298 IPR019786 -
Vifa1g07922 1842 SMART ARID_2 95 185 - -
Vifa1g07922 1842 SMART bright_3 96 190 IPR001606 GO:0003677
Vifa1g07922 1842 SUPERFAMILY ARID-like 75 193 IPR036431 GO:0003677
Vifa1g07922 1842 CDD PHD_RSF1 254 298 - -
Vifa1g07922 1842 Gene3D Cupin 28 542 - -
Vifa1g07922 1842 Pfam C5HC2 zinc finger 634 686 IPR004198 -
Vifa1g07922 1842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 301 IPR013083 -
Vifa1g07922 1842 SUPERFAMILY FYVE/PHD zinc finger 1448 1498 IPR011011 -
Vifa1g07922 1842 SMART PHD_3 253 299 IPR001965 -
Vifa1g07922 1842 SMART PHD_3 1451 1497 IPR001965 -
Vifa1g07922 1842 SMART PHD_3 1707 1749 IPR001965 -
Vifa1g07922 1842 SUPERFAMILY FYVE/PHD zinc finger 1702 1755 IPR011011 -
Vifa1g07922 1842 ProSitePatterns Zinc finger PHD-type signature. 1708 1748 IPR019786 -
Vifa1g07922 1842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1436 1503 IPR013083 -
Vifa1g07922 1842 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vifa1g07922 1842 SMART cupin_9 391 557 IPR003347 -
Vifa1g07922 1842 SUPERFAMILY Clavaminate synthase-like 341 572 - -
Vifa1g07922 1842 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vifa1g07922 1842 ProSitePatterns Zinc finger PHD-type signature. 1452 1496 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07922 Vifa-Chr1 1236808183 1236829568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07922 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 6.30e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g07922 PLU-1 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07922 K11446 - gmx:100789512 2887.83