Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07921 ATGGGAAAGGGTAACCCTAGGGCGGTTGAAAAAGGTGTAGTAGGTCCAAATTTGAGTGTTTCATCCACCACTGTACCATCTGCACCCGTGTTTTACCCAACCGAAGATGAGTTCAAAGATCCTTTGGAGTTTATTTACAAGATTAGACCCGTAGCTGAACCGTTTGGGATTTGTAGAATTGTTCCTCCTAAGAATTGGAAACCCCCTTTTGCATTGGATCTAGATTCTTTCACTTTTCAGACTAAGACTCAGGCTATTCATAAGCTTCAGGTTCGTCCTGCTGCTTCTGATTCCAAAACTTTTGAGTTGGAGTATTCTAGGTTTTTGAAGGATCATTCTAGTAAGAAGCTTAAGAAAAAGATTGTGTTTGAAGGGGAGGATTTGGATTTGTGTAAGCTTTTTAATGGTGTCAAGAGGTTTGGGGGGTATGATAAGGTCGTGGTTGGAAAGAAATGGGGGGAGGTTGCTAGGTTTGTGAAGTCTTCCGTTAAGATTTCGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTATCGGGAGCATCTTTATGATTATGAAATTTATTGTAACCGGATTAGTAAAGGAACGGTCGTGAGCGGTTGTAAGAAAAGTGCAGAGGTGGAGGAAGATTGTAAGAGTGATCATGGGGTGCAAGCTTCGGTGTCCAACAAGCATAACGGGATTGTAGATGGTTTGAAAGTTAAGGATCGGAAAGTAAAGGATGAAAATCGGAAAGTAAAGGATGTAAATCGGGATCAGATTTGTGAGCAATGTAAAAGTGGGTTGCATGGGGATGTGATGCTTTTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCACCGCCGTTGAAACAAATACCTCTAGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGATAGGGACAGTTTTGGTTTTGTGCCTGGGAAGCAATATTCGTTGGAAACTTTTAAACGCATTGCGGATAGGTCGAGGAGGAGATGGTTTGGACAGGGACCTGTTTCAAGGGTGCAAATAGAGAAAAAGTTCTGGGAGATAGTGGAGGGTTCGGTTGGTGAGGTTGAGGTTATGTATGGAAATGATTTGGATACGTCTATCTATGGGAGTGGTTTTCCAAATGAAACTAATCAGAAACCACAATCTATTGATGATAACTTATGGCAAGAATACTCTGCTAATCCATGGAATCTTAATAACTTGCCTAAGTTAAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATAGGAATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTATTCAATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGGGCATTTGAGAAGGTGATGAGAAGAAGCCTTCCTGACCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGTGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGAAGTTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCATATGGTGCATTTGGAGCTGATCTCTATAAGCGGTATCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGACAGCAGAGGGTCATCTTATTTGAAAATTGAATTGCTGAAAATACTGGATAGAGAAAAATCCTGGAGGGAGAAACTTTGGAAAAATGGTATCGTTAAATCATCTCGTTTAGCTCCTCGGAAGTGTCCCCAATATGTAGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTTGTATGCAGTTGCAGGCCATCATCTTTTGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTACTAAACTCCGTCTTCTCTATCGTCATTCACTGGGTGAATTGAATGACTTGGCATTTTCAATCGACAAATATATTTCTGAAGTAAAAGCTGAGAGTAGAAGTGCAAAAAAGCAGTCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGAAAGGTAGCTCAATTACGTTCACTCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTGTGACTGATGCATCTGTTATCGCACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAAAGAGTTTGACTGAAGCTCAGAAATGGGCAGAAGGGATAAAAGATTGTGTCACAAAAATTGAGTTGAGATTGAGTCATCAGGACTCAAGTTTCAAGAAAATTCATATAGACTATGTTAATGAGTTACTGAGATTTAACCCTGTACCATGCAACGAGCCTCATTATAATAAATTGAAGGAATATGCAAAAGAAGCAAGGTTGTTAGTTCAAGACATTGAGACTGCTTTGTCAAAGTGTTCCAACCTGTCTGAGTTGGAACTTCTATACTCTAGAGCTTGTGGAATACCCATCTACGTGAAAGGGACTAAAAAATTAAAAAGGAAGATTTCTTTAACCAAGGCGTGGATGGGTAGTGTCAGAAGCTGCATCTCAGTTAGAGATTCTGCTGAGTTAGATGTTGATGTTCTTTACAAGTTAAAATCGGAGATTGCGGATCTTCAAGTTCAACTCCCAGAGATAGATGCGCTTCAGAATCTATTAAATCAGGCAGAATCTTGTAGTTCTCAATGTCGTAGCATGTTAGAAGGTCCTATGAATCTCAAGAATGTTGGTTTGCTGCTTAAGGAATGGGACAGTTTTACAGTTGATGTACCGGAGTTGAGGCTACTAAGGAATTACCATTCAGATGCTGTGTCATGGGTTTCTCACTTTAATGATGTTTTAGATAAAGTTCACAGACAGGGAGATCATCATAATGCAGTTGATGAATTGAAAAGCATTCTTGAAAAAGGTTTCTCTTTGAAAATTCAAGTTGATGAGTTGCATCTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGACAGAAAGCTTCCCAGGCACATGATTCTAAGATGCCACTCGAATTCATTCAGCAACTGCTGAAGGAGGCCACTATGCTGGGAATTGAGGGAGAGAAGCAATTCGTCAGTTTATCGTGTGTGCTTGATGTCGCCATGCATTGGGAGGAAAAAGCTGGAGAAATTCTTTCATCTGAGGCTTCTATTTCTGATTTTGAGGACATGCTAAGAGCTTCAGAAAATATATTTGTTATTCTTACCTTACTTAATGATGTCAAAGAAGCGTTAGCTGAAGCTAATTCTTGGTTAAGGAATTCAAAGCCATATTTATCTTCTAACCGTGAGTCGAACTCTGCGCGAAACGTTGGGGACTTGCAGTTATTGGTTTCTCAATCAAAGCATCTTAAAGTACATTTAGAAGAAAGAAGGACACTTGAATTAATTTTGAATAACTGCAAAAAATGGGAGTGTGAAGCACATTCTCTACTTGATGATGCTCAGTGCTTATTTGAATTGGATAACACTGTTCATGGAATGAGCAGTGGTTTATTGTTTAAAGTGGAAGATTTGATTGCAAGAATTCAGTCTGCCATAGCATCTGGTGTATCTCTTGGTTTTGACTTCAGTGATATTTCAAAGCTTCAAGCATCTTGTTCTACACTGCAGTGGTGCAAAAGAGCCCTATGTTTCTGCAATCATTCTCCTTCTTTAAAGGATGTTTTGGAAGTTGTGGAAGGCCTCTCTCATTCCGCTGTTTCTGGTGCTCTTTTGAAAGTTCTGGTTGATGGGGTTGAATGGCTTAGGAGAGCGTTTGAGGGGATATCTAGACCTTGCAATTCTAGAAGATGTAAATTAACTGATATTCAAGATATTCTTACCGATTATCAGATTATTAAAATGACCTTTACGGATGTAAATTGTCAACTTGAAGAAGCCATTGGAAAGCATAGGTCGTGGCAAGAGCAAGTGCATCATTTTTTTAGTCTAAGTTCTAGGGAACGAACTTGGTCATCAATATTGCAGCTCAAGGAACTTGGAGATTCCGTTGCCTTTAGTTGCTCAGAACTTGATTCAATATTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAAAGATGCATCGATAATATTGGAGCTTTTTTCCAAAATGAAAAATCGCTGCTTCATGCACTGCAGAAGATAAAACAGACTCTAGATATATCGCTCTACATATATGGCAAGTTGCAAAAACAGAAGGAACCAAACTTATGCAACTACTGCTTTGTTGATTCTCAAGATCAAGACTTCCTTACTTGTTCCACTTGTATGGACCGCTATCACTTGCGGTGCATTGGACTAACAGAAACAGATGCTGGCCTCAGCGACTACACGTGCTCTTACTGTGAAATTTTGAAGGGTAAATCCCAAGATTCAAATGGAAGTTCCCTCCTGAGGTTTGAGAAACATATTGAATTGAACATTCTTGTCGAACTTCTGTCTGATGCTGAACGTTTCTGTCTGTGGATTGAAGAAAAAGATCTTCTGAACCAACTTATTGAGAAAGCCTTTGCATGCAAATCTGGCTTGAGAGAAATAGTGAACCATTCATCAGCTTATGTCGACGAAGATATTACCACCATCTCTGAAAATTTGATCATTGCAATAAAGGCTAGCAAAGTGGCTGGTGTCTATGATCAGGGTGATAGATGTGACCTTGAGCTGGCTTTAACAAAATACTTATGGAAGATTCAAGTCAATATATTGTTAAGTGGTGCAGTTAAGCCCACTATTGAAGAGATTCAGAAACATCTGAAAGAGGGAATATCTATGGAAATATCACCCAAGGATCACTATATGCTGAAACTTACAAATGTGAAGTGCTTGGGCTTGCACTGGGTAGAACTAGCCAAAAAGATATCAAATGATTCTGGAGCACTCGGCCTAGATAAAGTATATGAACTTGTAGCGGAAGGTGAAAACTTGCCCGTTGATGTAAATGAGGAACTCAAGATGTTGAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCCGGAAGGATGATTGCATGTTATCAATGTAGTGAGTGGTATCACTTTGATTGTATGAAATTATCATGCACGCAAGATATCTACATTTGCCCTGCGTGCAACCCATGTACAGGATTGCCTACTAACCATGACAGATTAACTACTGGGAAACTTGAGGAGCCTAAAACCCCTTCTCCCAGGCACAATAACCCTAGAAAGAAACGGAAGAGAGATGTGCCCAGCCACACTTGCAAGGTGTATGCGCCCAGGAATGAAGATGATAGTAATTTTAGGTTAGATGGGATAGAATGTCTAAGGTGGAAAATTCGCAAGTCATTTAAAAGAGTAACTAAAAGACGTGTTGAACTTCAAAGTCTTTCTCCATTTATATGCATAAAACGGTAA 5520 0.4011 MGKGNPRAVEKGVVGPNLSVSSTTVPSAPVFYPTEDEFKDPLEFIYKIRPVAEPFGICRIVPPKNWKPPFALDLDSFTFQTKTQAIHKLQVRPAASDSKTFELEYSRFLKDHSSKKLKKKIVFEGEDLDLCKLFNGVKRFGGYDKVVVGKKWGEVARFVKSSVKISDCAKHVLCQLYREHLYDYEIYCNRISKGTVVSGCKKSAEVEEDCKSDHGVQASVSNKHNGIVDGLKVKDRKVKDENRKVKDVNRDQICEQCKSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSDRDSFGFVPGKQYSLETFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSIYGSGFPNETNQKPQSIDDNLWQEYSANPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQARAFEKVMRRSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGSFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYKRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKIELLKILDREKSWREKLWKNGIVKSSRLAPRKCPQYVGTEEDPACIICQQYLYLSAVVCSCRPSSFVCLEHWEHLCECKTTKLRLLYRHSLGELNDLAFSIDKYISEVKAESRSAKKQSSCLSALTKKVKGSSITFTQLATEWLLQSSTILQNVFVTDASVIALRKAEQFLWAGSEMDSVRDMVKSLTEAQKWAEGIKDCVTKIELRLSHQDSSFKKIHIDYVNELLRFNPVPCNEPHYNKLKEYAKEARLLVQDIETALSKCSNLSELELLYSRACGIPIYVKGTKKLKRKISLTKAWMGSVRSCISVRDSAELDVDVLYKLKSEIADLQVQLPEIDALQNLLNQAESCSSQCRSMLEGPMNLKNVGLLLKEWDSFTVDVPELRLLRNYHSDAVSWVSHFNDVLDKVHRQGDHHNAVDELKSILEKGFSLKIQVDELHLVEIELKKANCRQKASQAHDSKMPLEFIQQLLKEATMLGIEGEKQFVSLSCVLDVAMHWEEKAGEILSSEASISDFEDMLRASENIFVILTLLNDVKEALAEANSWLRNSKPYLSSNRESNSARNVGDLQLLVSQSKHLKVHLEERRTLELILNNCKKWECEAHSLLDDAQCLFELDNTVHGMSSGLLFKVEDLIARIQSAIASGVSLGFDFSDISKLQASCSTLQWCKRALCFCNHSPSLKDVLEVVEGLSHSAVSGALLKVLVDGVEWLRRAFEGISRPCNSRRCKLTDIQDILTDYQIIKMTFTDVNCQLEEAIGKHRSWQEQVHHFFSLSSRERTWSSILQLKELGDSVAFSCSELDSILSEVEKVENWKKRCIDNIGAFFQNEKSLLHALQKIKQTLDISLYIYGKLQKQKEPNLCNYCFVDSQDQDFLTCSTCMDRYHLRCIGLTETDAGLSDYTCSYCEILKGKSQDSNGSSLLRFEKHIELNILVELLSDAERFCLWIEEKDLLNQLIEKAFACKSGLREIVNHSSAYVDEDITTISENLIIAIKASKVAGVYDQGDRCDLELALTKYLWKIQVNILLSGAVKPTIEEIQKHLKEGISMEISPKDHYMLKLTNVKCLGLHWVELAKKISNDSGALGLDKVYELVAEGENLPVDVNEELKMLRARCMLYCICRKPFDPGRMIACYQCSEWYHFDCMKLSCTQDIYICPACNPCTGLPTNHDRLTTGKLEEPKTPSPRHNNPRKKRKRDVPSHTCKVYAPRNEDDSNFRLDGIECLRWKIRKSFKRVTKRRVELQSLSPFICIKR 1839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07921 1839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1433 1500 IPR013083 -
Vifa1g07921 1839 SMART JmjN_1 27 68 IPR003349 -
Vifa1g07921 1839 FunFam Predicted protein 359 562 - -
Vifa1g07921 1839 ProSiteProfiles JmjC domain profile. 391 557 IPR003347 -
Vifa1g07921 1839 Pfam JmjC domain, hydroxylase 424 540 IPR003347 -
Vifa1g07921 1839 ProSitePatterns Zinc finger PHD-type signature. 1449 1493 IPR019786 -
Vifa1g07921 1839 Gene3D - 78 198 IPR036431 GO:0003677
Vifa1g07921 1839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1689 1747 IPR013083 -
Vifa1g07921 1839 ProSitePatterns Zinc finger PHD-type signature. 1705 1745 IPR019786 -
Vifa1g07921 1839 SUPERFAMILY FYVE/PHD zinc finger 247 301 IPR011011 -
Vifa1g07921 1839 SUPERFAMILY FYVE/PHD zinc finger 1699 1752 IPR011011 -
Vifa1g07921 1839 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Vifa1g07921 1839 Pfam jmjN domain 29 62 IPR003349 -
Vifa1g07921 1839 Pfam ARID/BRIGHT DNA binding domain 99 185 IPR001606 GO:0003677
Vifa1g07921 1839 MobiDBLite consensus disorder prediction 1759 1785 - -
Vifa1g07921 1839 CDD ARID 97 185 - -
Vifa1g07921 1839 ProSiteProfiles Zinc finger PHD-type profile. 251 301 IPR019787 -
Vifa1g07921 1839 ProSitePatterns Zinc finger PHD-type signature. 254 298 IPR019786 -
Vifa1g07921 1839 SMART ARID_2 95 185 - -
Vifa1g07921 1839 SMART bright_3 96 190 IPR001606 GO:0003677
Vifa1g07921 1839 SUPERFAMILY ARID-like 75 193 IPR036431 GO:0003677
Vifa1g07921 1839 CDD PHD_RSF1 254 298 - -
Vifa1g07921 1839 Pfam PLU-1-like protein 899 993 IPR013637 -
Vifa1g07921 1839 Pfam PLU-1-like protein 1223 1404 IPR013637 -
Vifa1g07921 1839 Pfam PLU-1-like protein 952 1194 IPR013637 -
Vifa1g07921 1839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 301 IPR013083 -
Vifa1g07921 1839 Gene3D Cupin 28 542 - -
Vifa1g07921 1839 Pfam C5HC2 zinc finger 634 686 IPR004198 -
Vifa1g07921 1839 SUPERFAMILY FYVE/PHD zinc finger 1445 1495 IPR011011 -
Vifa1g07921 1839 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1033 - -
Vifa1g07921 1839 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Vifa1g07921 1839 SMART cupin_9 391 557 IPR003347 -
Vifa1g07921 1839 SUPERFAMILY Clavaminate synthase-like 341 572 - -
Vifa1g07921 1839 SMART PHD_3 253 299 IPR001965 -
Vifa1g07921 1839 SMART PHD_3 1704 1746 IPR001965 -
Vifa1g07921 1839 SMART PHD_3 1448 1494 IPR001965 -
Vifa1g07921 1839 FunFam Transcription factor jumonji (JmjC) domain-containing protein 14 118 - -
Vifa1g07921 1839 Pfam PHD-finger 253 300 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07921 Vifa-Chr1 1236808183 1236829568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07921 28 92 JUMONJI Transcription Factor Family AT1G08620 55.072 6.29e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g07921 PLU-1 4.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07921 K11446 - gmx:100789512 2893.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07921 1 1236808183 1236829568 Vifa1g07921 1 1236808183 1236829568 ECH