Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07917 ATGGATGAAAGAGAAGCTATGACATTCTCTGATGGGTCTGGTTCATATTACATGCATAGAGGAGGAGGGGTTGGCGGGTCTGGTGGTAATGGAGGAGTGTTCCAACAAACACCTTCTGGGTTTAGAGCTTTTTCTAATAATGCTCATGGTGGTTCTGATGGTTCTGCATTTTCAGTGGAGCCTCAGCATGATGATTTTAGTCATGGTGGTGTTAGCAACAGCATAGGTTCGTCTCCTGGGCCTGTAGTGCCTTATTCAGGAGAGCAGTCTGTGAAAAAGAAAAGAGGGAGACCTAGGAAAAACGGCCGAGAGGGACGTCCGCCCGGAAGTGGGAGGAAACAACAGTTAGCTGCTCTAGGTGAATGGATGAACAACTCTGCTGGTCAGGCTTTTTCACCACATGTTATCACCATTGGAGTTCAGGAGGACATTGTAGCAAAGTTACTGGCATTTTCACAACTTAGACAACGTGCTTTATGCATCTTGTCGGGAACTGGGACTGTATCTTCAGTCACTCTGCGCCAGCCTGCTTCTACGACTATCAGCGTTGCATTTGAGGGGCGATTCCAAATATTAAGCTTATCTGGTTCTTACTTGGTTGCTGAAGACGGTGGACCTCAAAATCGAACTGGTGGCATTAGTGTTTCCCTCTCTAGTCCAGACGGTCATGTTATCGGCGGCGGCGTTGCTAGGCTTATTGCTGCAAGCCCTGTTCAGGTGGTGGTTTGCAGTTTTGTATATGGCGGCTCTAAGGTGAAGACAACCAAGCAAGGGACCGCCACAAAAGACGGTGATGGTTCAGAGCCTCAGAGTAGTGACCAGTTAGCTTCTCCAGGAAGTGAACCATCTAATCAAAACTACACAGCTTCTGGAACAGGAATAGGCACAATGTGGCTTGGATCAAGGCAAGTAGATGTGAAAAGTGAACAACATCCACACACTGGTATTGACTTGATGCAGGGGTGA 966 0.4762 MDEREAMTFSDGSGSYYMHRGGGVGGSGGNGGVFQQTPSGFRAFSNNAHGGSDGSAFSVEPQHDDFSHGGVSNSIGSSPGPVVPYSGEQSVKKKRGRPRKNGREGRPPGSGRKQQLAALGEWMNNSAGQAFSPHVITIGVQEDIVAKLLAFSQLRQRALCILSGTGTVSSVTLRQPASTTISVAFEGRFQILSLSGSYLVAEDGGPQNRTGGISVSLSSPDGHVIGGGVARLIAASPVQVVVCSFVYGGSKVKTTKQGTATKDGDGSEPQSSDQLASPGSEPSNQNYTASGTGIGTMWLGSRQVDVKSEQHPHTGIDLMQG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07917 321 MobiDBLite consensus disorder prediction 30 53 - -
Vifa1g07917 321 MobiDBLite consensus disorder prediction 255 294 - -
Vifa1g07917 321 ProSiteProfiles PPC domain profile profile. 128 267 IPR005175 -
Vifa1g07917 321 MobiDBLite consensus disorder prediction 1 113 - -
Vifa1g07917 321 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 280 IPR039605 GO:0003680
Vifa1g07917 321 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Vifa1g07917 321 Gene3D - 133 260 - -
Vifa1g07917 321 CDD DUF296 133 245 IPR005175 -
Vifa1g07917 321 MobiDBLite consensus disorder prediction 67 84 - -
Vifa1g07917 321 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07917 Vifa-Chr1 1235817962 1235820545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07917 1 321 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.980 2.14e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07917 - - tpra:123911083 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07917 1 1235817962 1235820545 Vifa6g03518 6 1157326386 1157328242 PCT