Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07906 ATGGGTAAAAAGTTTGATGGCTGGGAATGCATAAATGGCGGGTTGCATTGCTGTGGAAACCTTTCACCTGAGCCACACTATCCGTCGATGACGAGATACCCGAAAGGAACATCACCGGAAGTGGTGGAACAACCAGAGGCTGCCATAACTGTTGTTTTCTGCGTTATGGGAATGACATGTGCTGCCTGTGCTGGATCTGTTGAGAAAGCCATCAAGCGTTTACCTGGAATTCGAGAAGCAGTTGTTGATGTCTTGAATGATAAAGCTCAGGTTCAATATTATCCCTCCATAGTTAATGTATTCATCCGAACCGTTTCGAAGATTGCTAAGTGTCTGGAGGATCTTGGGATGTGGGACTCTAAAGTGGATGTTAACCCTTTTTTTATGATGAATTTGTTGAACACAAGTAAAGTTAATGATGAGGTCTACAAGCTTTTTAGATGTCAAGACTCTCGACTTTTTCGATGGTCTCGTTTGAGAGGGACTAAGGAGGGAGAAACAAACACTAATTATTTACACGCTTGTGTGAAGCAGAAGAGTCAGGGGAATTCTATAGTGGCACTTCTTGTTTCTATATGGATAAAGTTCAAGGAAAGATTAAGATAG 606 0.4191 MGKKFDGWECINGGLHCCGNLSPEPHYPSMTRYPKGTSPEVVEQPEAAITVVFCVMGMTCAACAGSVEKAIKRLPGIREAVVDVLNDKAQVQYYPSIVNVFIRTVSKIAKCLEDLGMWDSKVDVNPFFMMNLLNTSKVNDEVYKLFRCQDSRLFRWSRLRGTKEGETNTNYLHACVKQKSQGNSIVALLVSIWIKFKERLR 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07906 201 Gene3D - 50 122 - -
Vifa1g07906 201 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 9 121 - -
Vifa1g07906 201 ProSiteProfiles Heavy-metal-associated domain profile. 49 120 IPR006121 GO:0046872
Vifa1g07906 201 PRINTS Copper-transporting ATPase 1 signature 50 75 - -
Vifa1g07906 201 PRINTS Copper-transporting ATPase 1 signature 76 99 - -
Vifa1g07906 201 CDD HMA 55 116 IPR006121 GO:0046872
Vifa1g07906 201 SUPERFAMILY HMA, heavy metal-associated domain 45 117 IPR036163 GO:0046872
Vifa1g07906 201 ProSitePatterns Heavy-metal-associated domain. 55 84 IPR017969 GO:0046872
Vifa1g07906 201 Pfam Heavy-metal-associated domain 53 109 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07906 Vifa-Chr1 1233640155 1233642792 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07906 52 123 Primary Pumps ATPases AT1G63440 54.167 2.18e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07906 K17686 - vum:124830526 128.257