Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07905 ATGCTAGATCATAACATAGCTATTTCAGTGGAAGCTGAAGAAGTACTAGCAGAAGCCGAAACTATGGCTCAAACTGGGATTTTAGTATCATTGGATGGAGAAGTTGTTGGAGTTCTGGCTGTGTCTGATGCACTTAAACCTAATGCAAAAGAAGTAATTTCAATTCTAAAATCCATGAAAATCAGAAGCATAATGGTGACAGGTGATAATTGGGGAACTGCAAATTCTATAGCTAGACAAGTTGGTATTGAAACTGTCATGGCAGAAGCTCAACCAGAGACCAAAGCTACTAAAGTAAAAGAATTTCAGAATGATGGCTACATAGTTGGAATGGTGGGAGATGGGATAAATGACTCACCAGCACTAGTGGCAGCTGATGTTGGAATAGCAATTGGTGCTGGAACAGACATAGCTATAGAAGCAGCTGACATTGTTCTCATGAAGAGTAACTTGGAAGATATAATAATAGCCATTGATCTTGCGAAGAAAACTCTCTCGCGCATTCGTTTAAATTATGTTTGGGCTCTTGGCTACAATATTCTAGCAATACCTATTGCTGCTGGTGTTCTTTACCCATCTACTAGATTTCGGTTACCACCTTGGATTGCTGGAGCTGCTATGGCTGCATCTTCTATCAGTGTTGTTTGCTCTTCTCTTTTGTTAAAGAAATATAAGAGACCAAGCATGCTTAAGAAGTTGGAGATGAATGGTATTAAGATTGAATAA 726 0.3898 MLDHNIAISVEAEEVLAEAETMAQTGILVSLDGEVVGVLAVSDALKPNAKEVISILKSMKIRSIMVTGDNWGTANSIARQVGIETVMAEAQPETKATKVKEFQNDGYIVGMVGDGINDSPALVAADVGIAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTLSRIRLNYVWALGYNILAIPIAAGVLYPSTRFRLPPWIAGAAMAASSISVVCSSLLLKKYKRPSMLKKLEMNGIKIE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07905 241 Gene3D - 46 162 IPR023214 -
Vifa1g07905 241 SUPERFAMILY HAD-like 18 218 IPR036412 -
Vifa1g07905 241 Gene3D - 9 45 IPR023299 GO:0000166
Vifa1g07905 241 PRINTS P-type cation-transporting ATPase superfamily signature 37 48 - -
Vifa1g07905 241 PRINTS P-type cation-transporting ATPase superfamily signature 135 147 - -
Vifa1g07905 241 PRINTS P-type cation-transporting ATPase superfamily signature 59 69 - -
Vifa1g07905 241 PRINTS P-type cation-transporting ATPase superfamily signature 112 131 - -
Vifa1g07905 241 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 237 - -
Vifa1g07905 241 NCBIfam HAD-IC family P-type ATPase 12 192 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g07905 241 FunFam Probable copper-transporting ATPase HMA5 16 169 - -
Vifa1g07905 241 Pfam haloacid dehalogenase-like hydrolase 26 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07905 Vifa-Chr1 1233635252 1233636198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07905 1 241 Primary Pumps ATPases AT1G63440 75.519 2.83e-125 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07905 K17686 - gmx:100817431 347.436