Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07904 ATGGCGAAACTATTATCCTTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTCTCTGCGCGATCTCACTATCCCTCCATGCCTTCTTATCCCAAAGGCGAACCCGGTACCACCAGTTCCACCGCCGCATCCGCCGTTAACGAGGCTTCCAACGTCACCGGACTTTTCTCCGTTCACGGTATGACTTGCTCCGCTTGCGCCGGATCCGTCGAGAAATCCATCAAACGCCTCCATGGAATTCAGGAAGCTGTTGTTGATGTCCTCAACAACCGTGCTCGCGTCATCTTTCATCCCTCGTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCAGCGTTACTAGTGAACATTACAAATGATAATTCCATTCAAATATGCCGCATACAAGTCAAAGGAATGACATGCACGTCCTGCTCTACTGCTGTTGAATCAGCACTAATGGCCCTCGCCGGAGTCGTTGAAGCTCGAGTAGCTTTAGCAACTGAAGAAGCCAATGTTCATTACAACCCAAACATAATTAATCATAGTCAAATCTTGGAAGCGGTTGATGATGCTGGATTTGAAGCCATTCTTATCAGTTCAAGTGAAGATTTGAGCAAAATAGATCTTCAAGTGGAAGGTGATCTCACTGATCATTCCATGTTTAAGCTTATCGAAGACTCACTTCGATCACTTCCCGGGGTTTTAGAGTTACACACGAGTCTTGAAGTGAGTAAAATTTCACTTTCTTATAAACCGGATTTAACGGGACCAAGAGACTTCATCAATGTGATTCAAGAAACAAGTAATGGGAATTTGAAGGCGAAGATATTTCCGGGTGAAGGAGGAAGAAGAGATGCTCATAGAAACAAGGAAATAAAAAGTTATTATAAATCTTTTTTGTGGAGTTTGGTGTTTACTGTTCCAGTTTTTCTTACTTCCATGGTGTTTATGTACATTCCTGGAATAAAGGATTTACTGGATAACAAAGTTGTGAAAATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCGGTGCAGTTCGTATTCGGGTGGAGATTTTACGTTGGTTCTTATAAATCATTGCGCCGTGGCTCTGCTAATATGGATGTTCTTATTGCTCTTGGAACAAATGCTGCTTATTTCTATTCTGTTTATTCTGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTTTTTGAGACTAGCGCGATGCTTATTTCGTTTATTCTATTAGGGAAGTATCTTGAGATTTTAGCTAAAGGGAAAACATCGAACGCAATTGCTAAGCTCATGAATTTGACACCTGATACTGCTATATTGTTAAGTTTGAATGATGAAGGGAATGTTGTTGGGGAGGAAGAGATTGATAGTAGGTTGGTTCAGAAGAATGATGTGATTAAAATTATTCCGGGTGCAAAAGTAGCATCGGATGGTTTGGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAAGCACGTCCTGTGTCTAAGAGAAAAGGTGATACTGTTATTGGTGGAACATTGAATGAGAATGGAGTCTTGCATGTTAAGGCAACAAAAGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTCGGCTTGTTGAGTCTGCACAAATGGCCAAGGCTCCTGTGCAGAAGTTTGCCGATCGCATTTCCACATACTTTGTGCCGCTGGTGATTTTGATCTCATTTTCAACCTGGCTTGCCTGGTTTTTAGCTGGAAAATATCACGCCTACCCAAAATCCTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTGATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCTACTGCTGTTATGGTTGGCACTGGAGTTGGGGCATCTCAGGGTGTTTTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACGGGAACTCTTACTATTGGGAAGCCTGTGATAGTAAATACAAAGCTATTGATTAAAATGGTACTCCGGGAGTTCTATGAACTTGTGGCTGCAGCGGAGGTGAACAGTGAGCATCCTCTAGCTAAGGCCGTTGTTGAGTATGCCAAAAAATTTAAAGATGAAGAGAACCCTTCATGGCCAGAAGCACGGGATTTTGTTTCCATTACTGGACATGGTGTAAAGGCCACTGTTCGTAACAGAGAAATAATGGTGGGCAATAAGAGCTTGTTTACTGACCACAGTATTGCAATTCCTGCTGCTGCTGAAGATCTACTTGCTGAAGCTGAAAATTTGGCTCAAACAGGAATTGTAGTATCTATAAATGGGGAAGTAGCTGGAGTTTTAGCAGTATCTGATCCACTGAAATCAGGTGCTGAAGAAGTTATTTCCATTCTCAAGTCTATGAAAATTAAGAGCATCATGGTGACTGGGGACAACTGGGGAACTGCTAATTCTATTGCTAGGGAAGTTGGGATTGAAGATGTTATTGCTGAGGCGAAACCAGACCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACAGTGGCTATGGTAGGGGATGGCATCAACGATTCACCTGCACTTGTAGCAGCAGACGTTGGAATGGCAATAGGCGCTGGCACAGACATTGCCATTGAGGCAGCTGATATTGTCCTAATGAAGAGCAACTTAGAGGATGTCATAACAGCCATTGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTTAATTATATTTGGGCTTTGGGCTATAATGTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGATTGCCACCTTGGGTTGCTGGAGCTGCTATGGCTGCGTCTTCTGTTAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGGCCCGGGAAGCTGAACAGTCTTGACATAGGAGCCATAACAATTGAGACATCAAGTGATCCTTTGATCATACACGAAGATTGA 3009 0.4284 MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKGEPGTTSSTAASAVNEASNVTGLFSVHGMTCSACAGSVEKSIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLVNITNDNSIQICRIQVKGMTCTSCSTAVESALMALAGVVEARVALATEEANVHYNPNIINHSQILEAVDDAGFEAILISSSEDLSKIDLQVEGDLTDHSMFKLIEDSLRSLPGVLELHTSLEVSKISLSYKPDLTGPRDFINVIQETSNGNLKAKIFPGEGGRRDAHRNKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKDLLDNKVVKMLTIGEVIRWVLATPVQFVFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLSLNDEGNVVGEEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISTYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLIKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNREIMVGNKSLFTDHSIAIPAAAEDLLAEAENLAQTGIVVSINGEVAGVLAVSDPLKSGAEEVISILKSMKIKSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWVAGAAMAASSVSVVCCSLLLKYYKRPGKLNSLDIGAITIETSSDPLIIHED 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07904 1002 FunFam Probable copper-transporting ATPase HMA5 757 919 - -
Vifa1g07904 1002 FunFam Copper-transporting ATPase 1, putative 426 548 - -
Vifa1g07904 1002 Gene3D - 665 742 IPR023299 GO:0000166
Vifa1g07904 1002 Gene3D - 743 793 IPR023299 GO:0000166
Vifa1g07904 1002 SUPERFAMILY HMA, heavy metal-associated domain 203 267 IPR036163 GO:0046872
Vifa1g07904 1002 FunFam Copper-transporting ATPase HMA5 52 122 - -
Vifa1g07904 1002 SUPERFAMILY HMA, heavy metal-associated domain 52 118 IPR036163 GO:0046872
Vifa1g07904 1002 NCBIfam HAD-IC family P-type ATPase 411 944 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa1g07904 1002 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Vifa1g07904 1002 SUPERFAMILY Calcium ATPase, transduction domain A 458 544 IPR008250 -
Vifa1g07904 1002 SFLD p-type atpase 640 914 IPR044492 -
Vifa1g07904 1002 CDD HMA 134 195 IPR006121 GO:0046872
Vifa1g07904 1002 Gene3D - 51 120 - -
Vifa1g07904 1002 CDD P-type_ATPase_Cu-like 297 972 - -
Vifa1g07904 1002 ProSitePatterns Heavy-metal-associated domain. 136 165 IPR017969 GO:0046872
Vifa1g07904 1002 PRINTS Copper-transporting ATPase 1 signature 154 175 - -
Vifa1g07904 1002 PRINTS Copper-transporting ATPase 1 signature 108 128 - -
Vifa1g07904 1002 PRINTS Copper-transporting ATPase 1 signature 79 102 - -
Vifa1g07904 1002 PRINTS Copper-transporting ATPase 1 signature 53 78 - -
Vifa1g07904 1002 Pfam haloacid dehalogenase-like hydrolase 654 876 - -
Vifa1g07904 1002 SFLD Haloacid Dehalogenase 640 914 - -
Vifa1g07904 1002 Gene3D - 130 202 - -
Vifa1g07904 1002 SUPERFAMILY Calcium ATPase, transmembrane domain M 403 932 IPR023298 -
Vifa1g07904 1002 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 3 985 - -
Vifa1g07904 1002 CDD HMA 56 118 IPR006121 GO:0046872
Vifa1g07904 1002 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Vifa1g07904 1002 SUPERFAMILY HAD-like 657 968 IPR036412 -
Vifa1g07904 1002 Pfam E1-E2 ATPase 457 636 - -
Vifa1g07904 1002 Gene3D - 426 548 - -
Vifa1g07904 1002 Pfam Heavy-metal-associated domain 134 194 IPR006121 GO:0046872
Vifa1g07904 1002 Pfam Heavy-metal-associated domain 56 116 IPR006121 GO:0046872
Vifa1g07904 1002 ProSitePatterns Heavy-metal-associated domain. 58 87 IPR017969 GO:0046872
Vifa1g07904 1002 FunFam Copper-transporting ATPase HMA5 129 200 - -
Vifa1g07904 1002 NCBIfam heavy metal translocating P-type ATPase 371 971 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa1g07904 1002 ProSiteProfiles Heavy-metal-associated domain profile. 205 272 IPR006121 GO:0046872
Vifa1g07904 1002 NCBIfam copper ion binding protein 134 195 IPR006122 GO:0005507
Vifa1g07904 1002 NCBIfam copper ion binding protein 56 117 IPR006122 GO:0005507
Vifa1g07904 1002 Gene3D - 625 919 IPR023214 -
Vifa1g07904 1002 ProSitePatterns E1-E2 ATPases phosphorylation site. 660 666 IPR018303 -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 787 798 - -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 862 881 - -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 809 819 - -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 494 508 - -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 658 672 - -
Vifa1g07904 1002 PRINTS P-type cation-transporting ATPase superfamily signature 885 897 - -
Vifa1g07904 1002 SUPERFAMILY HMA, heavy metal-associated domain 126 201 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07904 Vifa-Chr1 1233611468 1233616821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07904 3 991 Primary Pumps ATPases AT1G63440 74.524 0.0 1502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07904 K17686 - gmx:100816893 1550.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07904 1 1233611468 1233616821 Vifa1g07904 1 1233611468 1233616821 ECH