Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g07904 | ATGGCGAAACTATTATCCTTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTCTCTGCGCGATCTCACTATCCCTCCATGCCTTCTTATCCCAAAGGCGAACCCGGTACCACCAGTTCCACCGCCGCATCCGCCGTTAACGAGGCTTCCAACGTCACCGGACTTTTCTCCGTTCACGGTATGACTTGCTCCGCTTGCGCCGGATCCGTCGAGAAATCCATCAAACGCCTCCATGGAATTCAGGAAGCTGTTGTTGATGTCCTCAACAACCGTGCTCGCGTCATCTTTCATCCCTCGTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGATGCTGGATTTGAAGCAGCGTTACTAGTGAACATTACAAATGATAATTCCATTCAAATATGCCGCATACAAGTCAAAGGAATGACATGCACGTCCTGCTCTACTGCTGTTGAATCAGCACTAATGGCCCTCGCCGGAGTCGTTGAAGCTCGAGTAGCTTTAGCAACTGAAGAAGCCAATGTTCATTACAACCCAAACATAATTAATCATAGTCAAATCTTGGAAGCGGTTGATGATGCTGGATTTGAAGCCATTCTTATCAGTTCAAGTGAAGATTTGAGCAAAATAGATCTTCAAGTGGAAGGTGATCTCACTGATCATTCCATGTTTAAGCTTATCGAAGACTCACTTCGATCACTTCCCGGGGTTTTAGAGTTACACACGAGTCTTGAAGTGAGTAAAATTTCACTTTCTTATAAACCGGATTTAACGGGACCAAGAGACTTCATCAATGTGATTCAAGAAACAAGTAATGGGAATTTGAAGGCGAAGATATTTCCGGGTGAAGGAGGAAGAAGAGATGCTCATAGAAACAAGGAAATAAAAAGTTATTATAAATCTTTTTTGTGGAGTTTGGTGTTTACTGTTCCAGTTTTTCTTACTTCCATGGTGTTTATGTACATTCCTGGAATAAAGGATTTACTGGATAACAAAGTTGTGAAAATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCAACACCGGTGCAGTTCGTATTCGGGTGGAGATTTTACGTTGGTTCTTATAAATCATTGCGCCGTGGCTCTGCTAATATGGATGTTCTTATTGCTCTTGGAACAAATGCTGCTTATTTCTATTCTGTTTATTCTGTTTTGAGAGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTTTTTGAGACTAGCGCGATGCTTATTTCGTTTATTCTATTAGGGAAGTATCTTGAGATTTTAGCTAAAGGGAAAACATCGAACGCAATTGCTAAGCTCATGAATTTGACACCTGATACTGCTATATTGTTAAGTTTGAATGATGAAGGGAATGTTGTTGGGGAGGAAGAGATTGATAGTAGGTTGGTTCAGAAGAATGATGTGATTAAAATTATTCCGGGTGCAAAAGTAGCATCGGATGGTTTGGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAAGCACGTCCTGTGTCTAAGAGAAAAGGTGATACTGTTATTGGTGGAACATTGAATGAGAATGGAGTCTTGCATGTTAAGGCAACAAAAGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTCGGCTTGTTGAGTCTGCACAAATGGCCAAGGCTCCTGTGCAGAAGTTTGCCGATCGCATTTCCACATACTTTGTGCCGCTGGTGATTTTGATCTCATTTTCAACCTGGCTTGCCTGGTTTTTAGCTGGAAAATATCACGCCTACCCAAAATCCTGGATACCATCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATATCTGTGATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACGCCTACTGCTGTTATGGTTGGCACTGGAGTTGGGGCATCTCAGGGTGTTTTGATCAAAGGGGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACGGGAACTCTTACTATTGGGAAGCCTGTGATAGTAAATACAAAGCTATTGATTAAAATGGTACTCCGGGAGTTCTATGAACTTGTGGCTGCAGCGGAGGTGAACAGTGAGCATCCTCTAGCTAAGGCCGTTGTTGAGTATGCCAAAAAATTTAAAGATGAAGAGAACCCTTCATGGCCAGAAGCACGGGATTTTGTTTCCATTACTGGACATGGTGTAAAGGCCACTGTTCGTAACAGAGAAATAATGGTGGGCAATAAGAGCTTGTTTACTGACCACAGTATTGCAATTCCTGCTGCTGCTGAAGATCTACTTGCTGAAGCTGAAAATTTGGCTCAAACAGGAATTGTAGTATCTATAAATGGGGAAGTAGCTGGAGTTTTAGCAGTATCTGATCCACTGAAATCAGGTGCTGAAGAAGTTATTTCCATTCTCAAGTCTATGAAAATTAAGAGCATCATGGTGACTGGGGACAACTGGGGAACTGCTAATTCTATTGCTAGGGAAGTTGGGATTGAAGATGTTATTGCTGAGGCGAAACCAGACCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACAGTGGCTATGGTAGGGGATGGCATCAACGATTCACCTGCACTTGTAGCAGCAGACGTTGGAATGGCAATAGGCGCTGGCACAGACATTGCCATTGAGGCAGCTGATATTGTCCTAATGAAGAGCAACTTAGAGGATGTCATAACAGCCATTGACCTTTCCAGAAAAACATTTTCCCGTATACGCCTTAATTATATTTGGGCTTTGGGCTATAATGTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGATTGCCACCTTGGGTTGCTGGAGCTGCTATGGCTGCGTCTTCTGTTAGCGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGGCCCGGGAAGCTGAACAGTCTTGACATAGGAGCCATAACAATTGAGACATCAAGTGATCCTTTGATCATACACGAAGATTGA | 3009 | 0.4284 | MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKGEPGTTSSTAASAVNEASNVTGLFSVHGMTCSACAGSVEKSIKRLHGIQEAVVDVLNNRARVIFHPSFVNEEAICEAIEDAGFEAALLVNITNDNSIQICRIQVKGMTCTSCSTAVESALMALAGVVEARVALATEEANVHYNPNIINHSQILEAVDDAGFEAILISSSEDLSKIDLQVEGDLTDHSMFKLIEDSLRSLPGVLELHTSLEVSKISLSYKPDLTGPRDFINVIQETSNGNLKAKIFPGEGGRRDAHRNKEIKSYYKSFLWSLVFTVPVFLTSMVFMYIPGIKDLLDNKVVKMLTIGEVIRWVLATPVQFVFGWRFYVGSYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEILAKGKTSNAIAKLMNLTPDTAILLSLNDEGNVVGEEEIDSRLVQKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISTYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLIKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNREIMVGNKSLFTDHSIAIPAAAEDLLAEAENLAQTGIVVSINGEVAGVLAVSDPLKSGAEEVISILKSMKIKSIMVTGDNWGTANSIAREVGIEDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNVLGIPIAAGVLFPSTGFRLPPWVAGAAMAASSVSVVCCSLLLKYYKRPGKLNSLDIGAITIETSSDPLIIHED | 1002 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g07904 | 1002 | FunFam | Probable copper-transporting ATPase HMA5 | 757 | 919 | - | - | |
| Vifa1g07904 | 1002 | FunFam | Copper-transporting ATPase 1, putative | 426 | 548 | - | - | |
| Vifa1g07904 | 1002 | Gene3D | - | 665 | 742 | IPR023299 | GO:0000166 | |
| Vifa1g07904 | 1002 | Gene3D | - | 743 | 793 | IPR023299 | GO:0000166 | |
| Vifa1g07904 | 1002 | SUPERFAMILY | HMA, heavy metal-associated domain | 203 | 267 | IPR036163 | GO:0046872 | |
| Vifa1g07904 | 1002 | FunFam | Copper-transporting ATPase HMA5 | 52 | 122 | - | - | |
| Vifa1g07904 | 1002 | SUPERFAMILY | HMA, heavy metal-associated domain | 52 | 118 | IPR036163 | GO:0046872 | |
| Vifa1g07904 | 1002 | NCBIfam | HAD-IC family P-type ATPase | 411 | 944 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Vifa1g07904 | 1002 | ProSiteProfiles | Heavy-metal-associated domain profile. | 52 | 118 | IPR006121 | GO:0046872 | |
| Vifa1g07904 | 1002 | SUPERFAMILY | Calcium ATPase, transduction domain A | 458 | 544 | IPR008250 | - |
Showing 1 to 10 of 46 entries
Duplication type information
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g07904 | K17686 | - | gmx:100816893 | 1550.41 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g07904 | 1 | 1233611468 | 1233616821 | Vifa1g07904 | 1 | 1233611468 | 1233616821 | ECH |
Showing 1 to 1 of 1 entries