Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g07877 | ATGGATAGACTCATAAGGTTAGAACCATCAAACATAGTACTAATAAGAGTTGAACAAGGACAAAAATGTCAAGGAAAAATAACCTTAAACAATGTCATGTACACTATGCCAGTTGCATTTAGGATCCAACCACTCATCAAAACAAGATACACAATCAAACCTCAATCAGGAATCATTTCACCATTAGCATCACTTGTGATAGAGATAACATATCATCCTCCACAACAACAAGGTTCAAGTAATCTTCCTCACTCTTTTCCTTTTTCAGATGATTCATTTCTTCTACATAGTGTTCTTGCTCCTGGTGCAGCCATCAAAGAACCTTCATCCATGTTTGATTCTGTCCCAAGTGATTGGTTCACTACTAAAAGAAAACAAGTTTTCATTGATAGTGCAATCAAAGTTATGTTTGTAGGGTCACAAATTTTGACTCAGCTTGTTGAAGATGGGAATTCAATGGATGATATAAGGGAAGTGCTTGAAAAAAGTGATCCTTTATGGGAATCTGTTAACTCTAAAGACTCAAAGGGACAAACTTTGCTTCATTTGGCCATTTCCAAAACAAGACCGGATCTTGTTCAATTGATCCTTGAATTCAAGCCTGATGTTGAAGCTACAAATAGCGTCGGTTCGACTCCGCTTGAGGCTGCGTCTTCCTCGGGCGAGTCGTTGATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACTGAAGGATCAGAATCTTCGATTTTTCGACCGATTCATCATGCGTCGAGAGAAGGACACATGGAGATTCTTAGGCTTCTTTTGCTCAAAGGTGCAAAAGTTGATTCATTGACAAAAGATGGTAACACTTCTTTACACTTGGCTGTTGAAGAAAAAAGAAGAGATTGTGCTAGGCTTTTGTTGGCAAACGGCGCGCGAACCGATGATCGGAACACAAGAGAAGGTGATACACCTTTACACATAGCAGCAGCCAATGGAGATGAGAACATGGTGAAGCTTTTACTGCATAAAGGAGCTACAAAATATGTGAGAAACAAACTAGGGAAAACTGCGTTCGATGTTGCGGCCGAAAACGGTCATTCGCGCCTCTTCGACGCGCTTCGTTTAGGGGACAGTTTATGCGTGGCAGCGCGAAAAGGCGAGGTGAGGACAATCCAAAAAGTTTTGGAAAGTGGTGGAGTGATCAATGGAAGAGATCAAAATGGATGGACATCACTTCATAGAGCTTCATTCAAAGGAAGAATAGATGCTGTTAGGTTTCTTGTGGAGAAAGGTATTGATTTGGATGCAAAAGATGAAGATGGCTATACAGCTTTGCATTGTGCTGCTGAATCAGGACATGCTGATGTGACTGAGTTTTTGGTTAAGAAAGGAGCTGATGTTGAAGCAAGGACTAATAAAGGTGTTAGTGCTTTGCAAATTGTTGAGTCATTGAACTATGTAGGGATTACAAGAATACTTGTGAATGGAGGTGCTAGTAGGGAAGGATTAGGTGAAAAATTACCATCTACACCTTCTAAGATTCCTTTTGGGAGTAAAGTCGAAGGTGAAAGTGTGATGACGATGAAGAAGAAGGTGAGTAGTCGAACTCGAGCACTACGTGGTAGCTTCGATCGTTCGATGCCTTTGGCTGTTCTCTAA | 1626 | 0.4084 | MDRLIRLEPSNIVLIRVEQGQKCQGKITLNNVMYTMPVAFRIQPLIKTRYTIKPQSGIISPLASLVIEITYHPPQQQGSSNLPHSFPFSDDSFLLHSVLAPGAAIKEPSSMFDSVPSDWFTTKRKQVFIDSAIKVMFVGSQILTQLVEDGNSMDDIREVLEKSDPLWESVNSKDSKGQTLLHLAISKTRPDLVQLILEFKPDVEATNSVGSTPLEAASSSGESLIVELLLAHKANTEGSESSIFRPIHHASREGHMEILRLLLLKGAKVDSLTKDGNTSLHLAVEEKRRDCARLLLANGARTDDRNTREGDTPLHIAAANGDENMVKLLLHKGATKYVRNKLGKTAFDVAAENGHSRLFDALRLGDSLCVAARKGEVRTIQKVLESGGVINGRDQNGWTSLHRASFKGRIDAVRFLVEKGIDLDAKDEDGYTALHCAAESGHADVTEFLVKKGADVEARTNKGVSALQIVESLNYVGITRILVNGGASREGLGEKLPSTPSKIPFGSKVEGESVMTMKKKVSSRTRALRGSFDRSMPLAVL | 541 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g07877 | 541 | Pfam | MSP (Major sperm protein) domain | 5 | 110 | IPR000535 | - | |
| Vifa1g07877 | 541 | Gene3D | - | 314 | 363 | IPR036770 | - | |
| Vifa1g07877 | 541 | Gene3D | - | 434 | 484 | IPR036770 | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 429 | 461 | - | - | |
| Vifa1g07877 | 541 | Gene3D | - | 131 | 239 | IPR036770 | - | |
| Vifa1g07877 | 541 | Gene3D | - | 364 | 433 | IPR036770 | - | |
| Vifa1g07877 | 541 | Gene3D | - | 240 | 313 | IPR036770 | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 4 | 138 | IPR000535 | - | |
| Vifa1g07877 | 541 | PANTHER | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED | 370 | 487 | - | - | |
| Vifa1g07877 | 541 | SUPERFAMILY | Ankyrin repeat | 169 | 490 | IPR036770 | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 209 | 241 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 176 | 207 | - | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 246 | 270 | - | - | |
| Vifa1g07877 | 541 | Pfam | Ankyrin repeats (many copies) | 398 | 450 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | PRINTS | Ankyrin repeat signature | 310 | 325 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | PRINTS | Ankyrin repeat signature | 445 | 459 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 309 | 341 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 176 | 208 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | Gene3D | Immunoglobulins | 1 | 128 | IPR013783 | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 396 | 428 | - | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 396 | 428 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 429 | 461 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 275 | 306 | - | - | |
| Vifa1g07877 | 541 | SUPERFAMILY | PapD-like | 2 | 151 | IPR008962 | - | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 246 | 274 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat profile. | 275 | 307 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | Pfam | Ankyrin repeats (3 copies) | 159 | 235 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | Pfam | Ankyrin repeats (3 copies) | 306 | 362 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | Pfam | Ankyrin repeats (3 copies) | 246 | 303 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 275 | 304 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 396 | 425 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 429 | 458 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 309 | 338 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 342 | 371 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 209 | 238 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 242 | 271 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | SMART | ANK_2a | 176 | 205 | IPR002110 | GO:0005515 | |
| Vifa1g07877 | 541 | ProSiteProfiles | Ankyrin repeat region circular profile. | 309 | 334 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g07877 | 367 | 486 | Ion Channels | AT4G32500 | 31.667 | 1.81e-07 | 52.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g07877 | - | - | gmx:100782444 | 770.385 |