Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07875 ATGTTGAAAGTCAAAAAGGAGCTCAAGGATTTTGAATTTGAATCACCTCATCGAGATTTGCTTCATTTATGTCTTTCTTCGCCTAATTGTAATAGCAACACTTGTTTTCTCGAATCAACTCCTCTTACAGGGAACAGAAAATCCCTAATTAGCTTGACAAAGAGATTATGGACAGAGGAAGAGGATAATCTTTTGATTGAGACAGTCAAGAAGCATGATGGAGTCAACTGGAAAAATATAGCTGCGTACCTTCCTGGGCGAACTGACGTCCAATGCTTCCATCGTTGGCAAAAGGTTTCAAATCCTGATCTTGTAAAGAGATCATGGACAAAGGAGGAGGACGAGACCCTAGTTGAACTAGTAAGAAAGTATGGTTTCAAGAGATGGTCTTTTATTGCAAAATCCATTCCGGGTCGTATAGGAAAGCAATGTCGAGAGAGGTGGCATAATCACCTTGATCCGACTATAAAAAAGGATGCTTGGTCAGAGGAGGAGGAATCAATACTTGCTCACTATTACCGATTACATGGCAGTAAATGGTCAGAAATTGCTAGGGTTCTTCCTGGAAGGAGTGACAATGCTATAAAAAATCATTGGAACTGCTCAATGAAGAAGAAGTCGTCTGTATCACCAATTAGGTGTGACAGGAATGTTTCCACCTCTGGTTTCTGCACTTTAGTAAATTCATCACATGATTTGGTTAAAGCTGGAGATCAAAGTTTAATTGGAATTGTTTCTCCCAAGCAAAGTCACTGGTTGAAGCACAATGCTGATAACAGTTTTGGTTTGGCAACTCCTAGGGCCTTAGGACAAGGTGAAAGAAGATTGTCTGATTCCCCAAATCAGATGGAAACAGTTATAAGTTGCGAAGACCACGGCAACCCTATGTTGTTTGCAACAAATATGGATTGTTTCCCTTCTTCCGGTACTGCTACTAATGAGTCCTATAATTCACCCAAGGTTTCTTTTACAGATTCAAAGTTTATTGCTGGTAATGAATCTGAAAGTTCCCATTTGGGCTACTTAAAATTGGTTAATCATGAGAAGAAAGTTCATGTTGGAAGGGAAAACAATAACGAAAGCGATGAAGCAATGCAATGCTGCCAATTATGGCAAAGTCCCAAACCACCATCAAGAATTGGCTTAGATAATTTAAATCTCAACCAATTTGTTCCATTCCTTCCTAAACATGGAATGGAATGA 1203 0.394 MLKVKKELKDFEFESPHRDLLHLCLSSPNCNSNTCFLESTPLTGNRKSLISLTKRLWTEEEDNLLIETVKKHDGVNWKNIAAYLPGRTDVQCFHRWQKVSNPDLVKRSWTKEEDETLVELVRKYGFKRWSFIAKSIPGRIGKQCRERWHNHLDPTIKKDAWSEEEESILAHYYRLHGSKWSEIARVLPGRSDNAIKNHWNCSMKKKSSVSPIRCDRNVSTSGFCTLVNSSHDLVKAGDQSLIGIVSPKQSHWLKHNADNSFGLATPRALGQGERRLSDSPNQMETVISCEDHGNPMLFATNMDCFPSSGTATNESYNSPKVSFTDSKFIAGNESESSHLGYLKLVNHEKKVHVGRENNNESDEAMQCCQLWQSPKPPSRIGLDNLNLNQFVPFLPKHGME 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07875 400 PANTHER MYB PROTEIN-RELATED 55 125 - -
Vifa1g07875 400 FunFam Transcriptional activator Myb isoform A 106 158 - -
Vifa1g07875 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 99 IPR017930 -
Vifa1g07875 400 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Vifa1g07875 400 SUPERFAMILY Homeodomain-like 103 199 IPR009057 -
Vifa1g07875 400 CDD SANT 108 152 IPR001005 -
Vifa1g07875 400 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Vifa1g07875 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 156 IPR017930 -
Vifa1g07875 400 SMART sant 105 154 IPR001005 -
Vifa1g07875 400 SMART sant 157 205 IPR001005 -
Vifa1g07875 400 SMART sant 53 102 IPR001005 -
Vifa1g07875 400 ProSiteProfiles Myb-like domain profile. 49 100 IPR001005 -
Vifa1g07875 400 FunFam Transcriptional activator Myb isoform A 53 105 - -
Vifa1g07875 400 CDD SANT 57 99 IPR001005 -
Vifa1g07875 400 Gene3D - 52 105 - -
Vifa1g07875 400 ProSiteProfiles Myb-like domain profile. 101 152 IPR001005 -
Vifa1g07875 400 Gene3D - 159 217 - -
Vifa1g07875 400 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 207 IPR017930 -
Vifa1g07875 400 ProSiteProfiles Myb-like domain profile. 153 203 IPR001005 -
Vifa1g07875 400 Gene3D - 106 157 - -
Vifa1g07875 400 CDD SANT 160 200 IPR001005 -
Vifa1g07875 400 Pfam Myb-like DNA-binding domain 109 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07875 Vifa-Chr1 1228857349 1228859731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07875 57 206 MYB Transcription Factor Family AT5G02320 66.667 9.59e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g07875 Myb_DNA-bind_6 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07875 - - psat:127120714 670.618