Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07874 ATGGCGGCATTACCGGTGGAGCAAACAGGTGAATCACCGACGACGGAATTGCAGAGATCTATTCCGACGCCGTTTCTGACCAAAACGTATCAACTTGTGGATGATCCTTCTGTGGATGATTTAATTTCATGGAACGAAGATGGCACAAGCTTCATCGTTTGGTTACCTGCTGAATTCGCAAGAGATTTGTTACCGAAGTATTTCAAACATAACAACTTCTCCAGTTTCGTTCGTCAGCTTAATACATATGGATTTCGGAAAGTTGTGCCGGATCGTTGGGAATTTGCAAACGACGGTTTCCGACGAGGTGAGAAGAATCTACTCCGTGATATACAGCGGCGGAAAATATTGTCGGCGGCAGGTACGCCGATTGTGACTACGACTGTGACTACAACGGTAGCCGCGGCGACTAATGTTGTGACGGTAGCTATGGCGGCACCGGTTAGAATAGTGTCTCCAACAACTTCCGGTGATGAACAGGTGGTTTCATCGAACTCGTCTCCTATTGTGGCGCACAATAGTACTACAGTGCACCGTAGTACAAGTTACACTACTTCGCCCGAGTTATTTGAAGAGAATGAAAGGCTTAAGAAAGAGAATATGCAACTGAGTAACGAGTTATGTCAATTGAAAGGTCTTTGTAATAGTATATTATCTATGATGAGTAATTATGCTTCTGGTTTTAGTCGACAGTTAGAATCATCGACTAGCGCCGCAACGGCACGGGCTGTCCTTGTAACTGAAGGAGGGAAAGCGTTGGATCTGTTGCATACAAGGAATGTTTCATTAGTTGAGGAGGCTGTGGCTGTTAATGTGGGTGGTGCTGGTGGTGGTGCTGAGACCGCGATTTTGGCTGGTGTTGCAGGTGGTACATCTGGTGCATCGTGTGAGACAGCAAATTTGGCTGAACCTGAGAATGGGCATGGGGCTCAAAATCCTAAACTGTTTGGGGTTTCTATTGGGCTTAAACGATGTAGGATAGAGTGTGAGGCTGAACCGGAGAGAGAGGAACGGGAACAGTATCAAATGCCAATGCAAATGCAGATTGAAACACAATCCTCTCATGAACATGATCACCATCAAATGCAAATGCAGATGCAAACACAATCCTCTCATGAACATGATCGAGGATCTGATGTGAAATCTGAACCGCATGATGGTAACGATGACTCGGATGATCAAGAGCATCGTTGGGATTTGATGAAATAG 1209 0.4549 MAALPVEQTGESPTTELQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGTSFIVWLPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDGFRRGEKNLLRDIQRRKILSAAGTPIVTTTVTTTVAAATNVVTVAMAAPVRIVSPTTSGDEQVVSSNSSPIVAHNSTTVHRSTSYTTSPELFEENERLKKENMQLSNELCQLKGLCNSILSMMSNYASGFSRQLESSTSAATARAVLVTEGGKALDLLHTRNVSLVEEAVAVNVGGAGGGAETAILAGVAGGTSGASCETANLAEPENGHGAQNPKLFGVSIGLKRCRIECEAEPEREEREQYQMPMQMQIETQSSHEHDHHQMQMQMQTQSSHEHDRGSDVKSEPHDGNDDSDDQEHRWDLMK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07874 402 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vifa1g07874 402 Gene3D - 18 115 IPR036388 -
Vifa1g07874 402 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 372 IPR027725 -
Vifa1g07874 402 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g07874 402 MobiDBLite consensus disorder prediction 349 402 - -
Vifa1g07874 402 Coils Coil 186 206 - -
Vifa1g07874 402 MobiDBLite consensus disorder prediction 372 402 - -
Vifa1g07874 402 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07874 Vifa-Chr1 1228834156 1228835480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07874 18 326 HSF AT4G11660 49.367 3.24e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g07874 HSF_DNA-bind 3.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07874 K09419 - gmx:100791020 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07874 1 1228834156 1228835480 Vifa1g07874 1 1228834156 1228835480 ECH
Vifa1g07874 1 1228834156 1228835480 Vifa1g10245 1 1705069771 1705071258 ECH
Vifa1g10245 1 1705069771 1705071258 Vifa1g07874 1 1228834156 1228835480 PCT