Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07873 ATGTCGACGACAAGGTCACCGAGCCGCTCCTCCGATGACATCGTCGATTCGACGCCGTTTCTTCCAAACGAAAACAACTCCGACGAAAACAACTCCGGCCGGCGAATTGTTCGCCGACAGAGGCTTCTCCAAGCGGCGCGTTTCCTCCGGCAAGCAAGCGGGAGGAGAATGATGCGTGAGCCCTCGGTTGTTGTCCGTGAAGCTGCGGCGGAGCAATTGGAGGAACGGCAAAGCGATTGGGCGTATTCGAAACCGGTTGTGATTCTCGACATCGTTTGGAACTTTGCGTTCGTTGTTGTTGCTACAACCGCTTTGTTTCTGAGCAGTAATGAATCGCCGGAAATGCCTCTTAGGTTGTGGATTGTGGGGTACGTTCTGCAATGCGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAAGAGACGGAGAAGGTTTCAACGTTCTTCTTCTGCTATAGCAGTAGCAGGTTCTGATAGGGTTGGTACTAGCAGTGGGAATTTGAGTGCAGGTTCTCCTTCTGTTTCTGGTTCAAGTTATGTTTCATTGGCACAATTTGATGAAGAGAGTACGAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAACTTTATCCCAAGATTCTCCTCAGCTTTATTGGTTATGTATAATCTTTCTTGGTTTTGATGTCTTCTTTGTCATTTTCTGTGTTGCGCTGGCCTGTATAATTGGTATCGCTGTTTGTTGCTGTCTTCCATGTATCATTGCACTTCTTTACGCTGTTGCAGACCAGCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAAAGTTGAAAGTAATGAGAAACAAACTAGTAATACCGAAGGACCTTCTGGAGGAATAATGACTGAATGCGGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCAGAATGTTGCATCTGCCTTTCCTCTTATGATGACGGAGTTGAACTACGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATAAATGCTACATGCCCCCTTTGCAAGTATAACATTTTGAAAAGTAGTAGCCTCGGCGAAGAGGAAGTGTAG 1167 0.4516 MSTTRSPSRSSDDIVDSTPFLPNENNSDENNSGRRIVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVATTALFLSSNESPEMPLRLWIVGYVLQCVLHMVCVCFEYKRRRRFQRSSSAIAVAGSDRVGTSSGNLSAGSPSVSGSSYVSLAQFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQTLSQDSPQLYWLCIIFLGFDVFFVIFCVALACIIGIAVCCCLPCIIALLYAVADQQEGASKEDIEQLSKFKFRKVESNEKQTSNTEGPSGGIMTECGADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSLGEEEV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07873 388 SUPERFAMILY RING/U-box 323 379 - -
Vifa1g07873 388 Pfam Ring finger domain 332 374 IPR001841 -
Vifa1g07873 388 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g07873 388 SMART ring_2 333 373 IPR001841 -
Vifa1g07873 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 382 IPR013083 -
Vifa1g07873 388 FunFam E3 ubiquitin-protein ligase At1g12760 319 384 - -
Vifa1g07873 388 PANTHER TARGET OF ERK KINASE MPK-1 53 379 - -
Vifa1g07873 388 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g07873 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07873 Vifa-Chr1 1228801070 1228808480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07873 1 381 C3H Transcription Factor Family AT1G68070 47.917 6.16e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07873 - - gmx:100790497 603.979