Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07872 ATGTCGACGACAAGGTCACCGAGCCGCTCCTCCGATGACATCGTCGATTCGACGCCGTTTCTTCCAAACGAAAACAACTCCGACGAAAACAACTCCGGCCGGCGAATTGTTCGCCGACAGAGGCTTCTCCAAGCGGCGCGTTTCCTCCGGCAAGCAAGCGGGAGGAGAATGATGCGTGAGCCCTCGGTTGTTGTCCGTGAAGCTGCGGCGGAGCAATTGGAGGAACGGCAAAGCGATTGGGCGTATTCGAAACCGGTTGTGATTCTCGACATCGTTTGGAACTTTGCGTTCGTTGTTGTTGCTACAACCGCTTTGTTTCTGAGCAGTAATGAATCGCCGGAAATGCCTCTTAGGTTGTGGATTGTGGGGTACGTTCTGCAATGCGTTCTTCATATGGTTTGTGTTTGTTTTGAGTATAAGAGACGGAGAAGGTTTCAACGTTCTTCTTCTGCTATAGCAGTAGCAGGTTCTGATAGGGTTGGTACTAGCAGTGGGAATTTGAGTGCAGGTTCTCCTTCTGTTTCTGGTTCAAGTTATGTTTCATTGGCACAATTTGATGAAGAGAGTACGAGTGTTGCAAAGCATTTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGTGGTCAAACTTTATCCCAAGATTCTCCTCAGCTTTATTGGTTATGTATAATCTTTCTTGGTTTTGATGTCTTCTTTGTCATTTTCTGTGTTGCGCTGGCCTGTATAATTGGTATCGCTGTTTGTTGCTGTCTTCCATGTATCATTGCACTTCTTTACGCTGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAAAGTTGAAAGTAATGAGAAACAAACTAGTAATACCGAAGGACCTTCTGGAGGAATAATGACTGAATGCGGGGCTGATTCACCTATTGAACATGTTCTTGCTGAGGAGGATGCAGAATGTTGCATCTGCCTTTCCTCTTATGATGACGGAGTTGAACTACGAGAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGTATATAAATGCTACATGCCCCCTTTGCAAGTATAACATTTTGAAAAGTAGTAGCCTCGGCGAAGAGGAAGTGTAG 1164 0.451 MSTTRSPSRSSDDIVDSTPFLPNENNSDENNSGRRIVRRQRLLQAARFLRQASGRRMMREPSVVVREAAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVATTALFLSSNESPEMPLRLWIVGYVLQCVLHMVCVCFEYKRRRRFQRSSSAIAVAGSDRVGTSSGNLSAGSPSVSGSSYVSLAQFDEESTSVAKHLESANTMFSFIWWIIGFYWVSAGGQTLSQDSPQLYWLCIIFLGFDVFFVIFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRKVESNEKQTSNTEGPSGGIMTECGADSPIEHVLAEEDAECCICLSSYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSSLGEEEV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07872 387 PANTHER TARGET OF ERK KINASE MPK-1 53 378 - -
Vifa1g07872 387 Pfam Ring finger domain 331 373 IPR001841 -
Vifa1g07872 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Vifa1g07872 387 SUPERFAMILY RING/U-box 322 378 - -
Vifa1g07872 387 MobiDBLite consensus disorder prediction 1 34 - -
Vifa1g07872 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 381 IPR013083 -
Vifa1g07872 387 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g07872 387 FunFam E3 ubiquitin-protein ligase At1g12760 318 383 - -
Vifa1g07872 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07872 Vifa-Chr1 1228801070 1228808480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07872 1 380 C3H Transcription Factor Family AT1G68070 48.042 1.00e-117 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07872 - - gmx:100790497 608.601