Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07866 ATGTTTACATCCAAACTTTTTTGGGTTGTATCCCTTATTAGCCTCCAACTTTTGTTGGCAAATTGTTGTTCTACAAAGAGTCTTGTTCCAGCTTTGTATGTTTTTGGTGATTCAAGTGTAGATGCTGGAAATAACAATAATTTGAATACTGTTGCTAAAGCTAATAAATTCCCTTATGGCATAGATTTCAATAATTGCTCAACGGGAAGGTTTAGCAATGGCAAAACCTTTGTAGATCTTATTGCTATTAAATTAGGTTTACCAATGCCACCTCCATACATCGGTGTCTCGGAGATCGAGAGATATCAACTAACATCAGGTATCAACTATGCATCAGGTTCATGTGGAATCTTGAATTCAACGAGAAATGGGGAATGCTTGTCATTGGAAAAACAAATTGAATATTTCACCTCAACAGTGATGAATGATCTTCCAAGAAACTTTCAGAGCAAAACAAAATTGAGGAATTACTTATCAAAATCTATATTTCTTTTATCAGTTGGTTCCAATGATTATATTCTTAATTATTTTAAACAAGCAATGGGACCAAACCAAATGGTTAATCCTGAAGAATTTACTGATTATCTTCTTGACCAACTTTGTTCAAATATAAAAAAAATTTATGATCTAGGAGGAAGAAAATTAGTGATAATTGGCATAGTTAAGCTCTTCACAAACAAACTCCCAAAAAAGCTTCAAGAGTTGAAATTGAAATCCAATCTCTCAAGATCAGTATTTACTATTTTGGACGGTTTTAAATTGTTCAGAAAGATACAAAACTCCCCTGAAAAATATGGTTTGACAAATATTTGGGATTCATGTGTTGGAGAAGGAGGAAAACCTTGTGAAAATCGAAAGGAATATTTTTTTTATGATTTTGCCCATAGCACTGAAGCTGTAAATGAAATATATGCAGATAGGTGTTTTGGTGGAAGAGATACATGTTTTCCTCTTAATATTAAGAAATTAGTTCATGCACATTAA 984 0.3252 MFTSKLFWVVSLISLQLLLANCCSTKSLVPALYVFGDSSVDAGNNNNLNTVAKANKFPYGIDFNNCSTGRFSNGKTFVDLIAIKLGLPMPPPYIGVSEIERYQLTSGINYASGSCGILNSTRNGECLSLEKQIEYFTSTVMNDLPRNFQSKTKLRNYLSKSIFLLSVGSNDYILNYFKQAMGPNQMVNPEEFTDYLLDQLCSNIKKIYDLGGRKLVIIGIVKLFTNKLPKKLQELKLKSNLSRSVFTILDGFKLFRKIQNSPEKYGLTNIWDSCVGEGGKPCENRKEYFFYDFAHSTEAVNEIYADRCFGGRDTCFPLNIKKLVHAH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07866 327 Pfam GDSL-like Lipase/Acylhydrolase 32 306 IPR001087 GO:0016788
Vifa1g07866 327 CDD SGNH_plant_lipase_like 30 312 IPR035669 -
Vifa1g07866 327 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 221 323 - -
Vifa1g07866 327 Gene3D SGNH hydrolase 20 310 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07866 Vifa-Chr1 1227461786 1227463876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07866 28 326 Acyl Lipid Metabolism Gene Families AT4G10950 30.882 2.77e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07866 - - aprc:113856642 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07866 1 1227461786 1227463876 Vifa1g07866 1 1227461786 1227463876 ECH
Vifa1g10210 1 1698046451 1698047955 Vifa1g07866 1 1227461786 1227463876 PCT