Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07852 ATGAATATTTTTGAGTCACAACACCACTCTGATACATCCTCTTCTTCTTCGGTAAGAAGCTCGTCAAACAGTAATAATGCAGAAACGTTTTTGGCATCTGAGAGACCAAAGAAGCTAACAGGTAAAAGAGTATTCAAGGAGACAAGGCACCCTCTGTACCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACCGTAACAAATGCAGCAAGTCGAGGATTTGGCTTGGAACATATCCTACGCCTGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGAAAATCAGCCTGTCTTAATTTTGCTGACTCCGCATGGCGGTTGAGGTTGCCGGTGTCAAATGATGCAGAGGAGATAAGGAAAGCTGCGACGGAAGCTGCTGAGTTGTTTGCTGTTGAAGACAACAATCAGTGTGAGGTTAGTGTCGGTGATGGAGTGGTCATGGAAGATTCCAATGATAAACATGTTATGATCAAACAAGTTCCGACGGAATTTGAAGAGATGCATGATATGCTTTTGAGTATTGCAAATGAGCCTTTACGTTCCCCTTCTCCTTCCATTACAGATTATGCCACTAACTGGTGTCACATGGACATGTTTGACACTCAAGTTTCATCATTGTGGGACTTCTCGAATTTTTTTAGTTGA 681 0.4332 MNIFESQHHSDTSSSSSVRSSSNSNNAETFLASERPKKLTGKRVFKETRHPLYRGVRKRNNNKWVCEMRVPNRNKCSKSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPVSNDAEEIRKAATEAAELFAVEDNNQCEVSVGDGVVMEDSNDKHVMIKQVPTEFEEMHDMLLSIANEPLRSPSPSITDYATNWCHMDMFDTQVSSLWDFSNFFS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07852 226 SUPERFAMILY DNA-binding domain 52 115 IPR016177 GO:0003677
Vifa1g07852 226 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vifa1g07852 226 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Vifa1g07852 226 ProSiteProfiles AP2/ERF domain profile. 52 113 IPR001471 GO:0003700|GO:0006355
Vifa1g07852 226 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g07852 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 220 IPR045277 GO:0003700
Vifa1g07852 226 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g07852 226 SMART rav1_2 52 119 IPR001471 GO:0003700|GO:0006355
Vifa1g07852 226 Gene3D AP2/ERF domain 52 114 IPR036955 GO:0003700|GO:0006355
Vifa1g07852 226 Pfam AP2 domain 51 105 IPR001471 GO:0003700|GO:0006355
Vifa1g07852 226 CDD AP2 51 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07852 Vifa-Chr1 1226058541 1226059221 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07852 25 221 AP2-EREBP Transcription Factor Family AT1G12610 44.545 8.59e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g07852 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07852 - - psat:127120702 334.339