Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07851 ATGAATATTTTTGAATCATCACTTAGCGAGTTAAACTATAGCAGCACACACCACCATTCAGATACATCTTCTTCCTCAGAAATAAACTCCTCAAACAGTAATAATGCAAAAACGTTTTTGGCAAATGAGAGACCAAAGAGGCGAACAGGTAGAAGAGTATTCAAAGAGACAAGGCACCCTGTGTACCGAGGAGTACGAAAGAGGAACAATAACAAGTGGGTTTGTGAGATGCGAGTTCCTAACCGTAACAAATGCAGCAAGTCGAGGATTTGGCTTGGAACATATCCTACACCTGAAATGGCTGCACGTGCACACGATGTTGCTGCACTCGTTCTTAAGGGAAAATCAGCTTGTCTTAATTTTGCTGACTCCGCATGGCGGTTGAGGTTGCCGGAGTCAAATGATGCAGAGGAGATAAGGAAAGCTGCGACGGAAGCTGCTGAGTTGTTTGCTGTTGAAGACAACAATCAGTGTGAGGTTAGTGTTGGTGATGGAGTGGTCATGGAAGATTCGAATGATAAACATGTTATGATCAAACAAGTTCCGACGGAATTTGAAGACATGCATGATATGCTTTTGAGTATTGCAAATGAGCCTTTACGTTCCCCTTCTCCTTCCATCACAGATTATGCCACTAACTGGTGTCACATGGACATGTTTGACACTCAAGTTTCATCATTGTGGGACTTCTCCAATTTTTTTAGTTGA 708 0.4237 MNIFESSLSELNYSSTHHHSDTSSSSEINSSNSNNAKTFLANERPKRRTGRRVFKETRHPVYRGVRKRNNNKWVCEMRVPNRNKCSKSRIWLGTYPTPEMAARAHDVAALVLKGKSACLNFADSAWRLRLPESNDAEEIRKAATEAAELFAVEDNNQCEVSVGDGVVMEDSNDKHVMIKQVPTEFEDMHDMLLSIANEPLRSPSPSITDYATNWCHMDMFDTQVSSLWDFSNFFS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07851 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 229 IPR045277 GO:0003700
Vifa1g07851 235 ProSiteProfiles AP2/ERF domain profile. 61 122 IPR001471 GO:0003700|GO:0006355
Vifa1g07851 235 CDD AP2 62 124 IPR001471 GO:0003700|GO:0006355
Vifa1g07851 235 MobiDBLite consensus disorder prediction 13 51 - -
Vifa1g07851 235 SUPERFAMILY DNA-binding domain 61 124 IPR016177 GO:0003677
Vifa1g07851 235 Gene3D AP2/ERF domain 61 123 IPR036955 GO:0003700|GO:0006355
Vifa1g07851 235 MobiDBLite consensus disorder prediction 13 40 - -
Vifa1g07851 235 Pfam AP2 domain 60 114 IPR001471 GO:0003700|GO:0006355
Vifa1g07851 235 SMART rav1_2 61 128 IPR001471 GO:0003700|GO:0006355
Vifa1g07851 235 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Vifa1g07851 235 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07851 Vifa-Chr1 1225828851 1225829558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07851 1 230 AP2-EREBP Transcription Factor Family AT5G51990 43.320 1.10e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g07851 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07851 - - psat:127120702 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07851 1 1225828851 1225829558 Vifa1g07851 1 1225828851 1225829558 ECH
Vifa4g03053 4 982687706 982688428 Vifa1g07851 1 1225828851 1225829558 PCT