Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07844 ATGAACGATCTTCTAACGGAGTCCTTTGATATCCCCCGTGGCCAAGGTCGTGGAGGTGGTGACGTTGAGTTGGGAGACTATGGAAGGAATTCAGGAGAGCTTGGCTTGGAAAGCTTCTTCAAAAAGATTCAAGAGCTTGATAAACAATATGCTAAGCTGAATAGCCTTTTGAGAAAGCTCCAGGACGCCCATGAGGAGTCCAAAAGTGTCTCCAAAGCTCCTGCTATGAAGGGTATAAAGCAGAGAATGGAGAAAGATGTAGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAGGTTGAAGAGCTGGACAAAGAGAATTTGGCTAATAGGCAGAAGCCTGGTTGTGGAAAAGGATCAGCTGTTGACCGGTCAAGAACAGCAACGACAGTTTCCTTGAAAAAGAAACTGAAGGACAAGATGGCTGAATTTCAGATCCTCAGAGAATCCATCCATGAAGAATATCGTGAGGTTGTTGAGAGACGAGTATTTACAGTAACGGGCAAACAAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGACAGTGAACAAATTTTCCAGAAAGCAATTCAGGAACAAGGACGAGGCCAGATAGTGGACACCCTCGCAGAAATTCATGAACGACACGAAGCTGTCAGAGATGTTGAGAGGAAACTGCTTGATTTGCAACAGATATTTATGGATATTGCAGTGTTAGTTGATGCACAAGGAGATATGCTTGACAACATAGAATCACAGGTTTCAAGTGCAGTAGATCATGTGCAACAAGGAAATAATACCCTCCAAAAGGCAAAGAAACTGCAAAGAAACTCAAGAAAATGGATGTGTATAGCCATCATGATACTTCTCATTTTTGTTATAATCATTGTTGTTTCTGTCATCAAACCATGGGTCACCAAACAAGGTGCATAG 924 0.4188 MNDLLTESFDIPRGQGRGGGDVELGDYGRNSGELGLESFFKKIQELDKQYAKLNSLLRKLQDAHEESKSVSKAPAMKGIKQRMEKDVDEVKKTAHYLKTKVEELDKENLANRQKPGCGKGSAVDRSRTATTVSLKKKLKDKMAEFQILRESIHEEYREVVERRVFTVTGKQADEETIDRLIETGDSEQIFQKAIQEQGRGQIVDTLAEIHERHEAVRDVERKLLDLQQIFMDIAVLVDAQGDMLDNIESQVSSAVDHVQQGNNTLQKAKKLQRNSRKWMCIAIMILLIFVIIIVVSVIKPWVTKQGA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07844 307 SMART tSNARE_6 201 268 IPR000727 -
Vifa1g07844 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa1g07844 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Vifa1g07844 307 Coils Coil 36 66 - -
Vifa1g07844 307 CDD SynN 36 193 IPR006011 GO:0016020
Vifa1g07844 307 Gene3D - 199 299 - -
Vifa1g07844 307 Pfam Syntaxin 38 241 IPR006011 GO:0016020
Vifa1g07844 307 FunFam Syntaxin 132 199 299 - -
Vifa1g07844 307 Coils Coil 87 107 - -
Vifa1g07844 307 CDD SNARE_syntaxin1-like 205 267 - -
Vifa1g07844 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Vifa1g07844 307 Coils Coil 135 155 - -
Vifa1g07844 307 PANTHER SYNTAXIN 40 291 IPR045242 -
Vifa1g07844 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Vifa1g07844 307 Gene3D - 36 164 - -
Vifa1g07844 307 FunFam Syntaxin 132 31 160 - -
Vifa1g07844 307 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g07844 307 Pfam SNARE domain 242 294 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07844 Vifa-Chr1 1224478536 1224483352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07844 1 307 SNARE and Associated Proteins AT3G03800 69.707 1.80e-150 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07844 K08486 - gmx:100306329 517.309