Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07841 ATGGAAATTCAATTTGAGGAACCAAAGAAGAGTTTGAGACCAAAAAGGAGCAACAAATTATTCAAAGGTGGAAGCAAAAAGAGTGAAACAAAAAACAAGTTTGTTGGGGTGAGACAAAGGCCATCGGGTAGATATGTTGCTGAAATTAAGGACACAACACAAAACATAAGAATGTGGCTTGGAACATTCGAGAAAGCCGAGGAAGCCGCGAAAGCTTATGATGAAGCCGCCACACTTCTTCGCGGTTCCAACACTCGCACCAACTTCATCACACATGTTTCCTATGATTCTCCTCTCGCTTTTCGGATTAAAAATCTTCTTAAAAATCGAGAAAAAGATAATGAAAAACAAGTAGAAGAAGATTTGGATGTTAGAAGCAGCATCACGAGCCGCGTTAGTACGACTAATGGTAATACTAATAATATTAATATTAGTAGCACAATGATCTGTGCTGACATGGTTAATAGTATTACTAATAGTACCGGTGCTAGCTGCGTGACTAGTACTAGTACTAACACCACGGATAATGTCTACATGGTTAGTACTGGTGCTAGCAGCATGACTAACACTAATATTACTATTAGTACTAGTTCGAGCAAAAACAATATTGATGAAAACTCGATTTCTAGTGTGACGACAATACAAAACACAAGATTATTCGATGATGCATATAGGCCAGATATGAGCAATTTCAATGAGTATGAGTCAAGTTACAATAAGTCAAGTGTTTCATGGGATTTTGGACCTACTTTTGATAACTTTCCATTTGATCAAATGTTGGATATGAGTGATGAATTAGGGGTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCATGAGTACATGGAAAATTTTCAAGATTGCAATGAACCTCTATGGAATCTTTCACCATTTTGCTCATTTTTAAGTTCAAACAATATGCATGAAGTCTAA 969 0.3633 MEIQFEEPKKSLRPKRSNKLFKGGSKKSETKNKFVGVRQRPSGRYVAEIKDTTQNIRMWLGTFEKAEEAAKAYDEAATLLRGSNTRTNFITHVSYDSPLAFRIKNLLKNREKDNEKQVEEDLDVRSSITSRVSTTNGNTNNINISSTMICADMVNSITNSTGASCVTSTSTNTTDNVYMVSTGASSMTNTNITISTSSSKNNIDENSISSVTTIQNTRLFDDAYRPDMSNFNEYESSYNKSSVSWDFGPTFDNFPFDQMLDMSDELGVSEFERMKVERQISASLYAINGVHEYMENFQDCNEPLWNLSPFCSFLSSNNMHEV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07841 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 280 - -
Vifa1g07841 322 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Vifa1g07841 322 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 SMART rav1_2 33 97 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vifa1g07841 322 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g07841 322 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vifa1g07841 322 FunFam ethylene-responsive transcription factor RAP2-11 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07841 Vifa-Chr1 1224272140 1224273108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07841 14 307 AP2-EREBP Transcription Factor Family AT5G19790 35.577 4.03e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g07841 AP2 2.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07841 K09286 - gmx:100796898 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07841 1 1224272140 1224273108 Vifa1g07841 1 1224272140 1224273108 ECH
Vifa1g07841 1 1224272140 1224273108 Vifa1g07841 1 1224272140 1224273108 PCT