Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07837 ATGTCTCATTTGGTTTATGGTGAAACTCAATCTTTTGGAGACTCACACCATGGACAAGGTCGACAACATGTTCCATTTCCAACCAATTCAAGTTCCTTAAGGATTCTTCTCTTACATGGAAACTTAGAAATTTGCATCAAAGAAGCCAAAAACCTTCCCAACATGGACACTTTTCATAAGGCAATGGGAGACATGTTTTCATTCTTACCTACAAAACTTAGTGGTAAAATTGAAGGCAAAATGTCTCAAAATCTAACTAGTGATCCATATGTTACTGTCTCTATAGCTGGTAATGTTATTGCAAGAACTTTTATCATTAGAAACGATGAAAACCCGGTTTGGATGCAGCATTTTAATGTTCCTGTTGCACATCTTGCATCAGAGATTCACTTTGTTGTAAAAGACAATGATGTTGTGGGTTCACAGGTTATCGGTGCAGTGGGAATTCCGGTTGAGAACTTATGTAATGGTTCCAAACTTGAAGGCTTTTTTCCAATTCTTAATACTAATGGAAAGCCCTTTAAGACTGATACAGTTTTAGGCTTATCAATTCAGTATACTCCTGTTGATAAGGTTACCCTTTATAGTAACGGTGTCGGTGAGGATTATCAAGGTGTTCCTGCTACGTATTTTCCGCTTAGAAAAGGCGGAAAAGTAACACTTTATCAAGATGCTCATGTTCCACAAGATTCTCTTCCTAGTTTGAAGGTTGATGATGTGAGTTGTTATGAGAATGGAAACTGTTGGCATGACATCTTCGATGCGATAAGTCACGCGTGTCGATTGGTCTATATCGTCGGTTGGTCTGTTTACTACAATGTTAGTCTCATCAGAGATACTAGAGATGGAAAAGATTATTCTTTAGGCGAACTTCTCAAAGCCAAATCACAAGAAGGTGTGAGAGTGCTTCTACTTGTATGGGATGATCTTACTTCTAATACCGTGCTCGGATATAAAACAGTTGGACTAATGAATACTTACGACGAGGAAACTCGTCGTTTTTTCAAGCATTCTTCGGTTAGAGTGCTTCTTTGTCCAAGATCTGGAGGAAAAGGACATAGCTGGGTGAAACAACAGGAAGCTGGAACAATCTATACACATCATCAGAAGACAGTGATTGTGGATGCTGATGCAGGTCATCATAAAAGAAAGATTGTAGCTTTCATTGGAGGTCTTGATTTATGTTTGGGAAGATATGATACCCCGGAACATTCTCTCTTCAGGACTTTGCAGACAACACACAAAGATGATTTTTATAATAATAACTTTGAGGGTTCTGCTAGTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCAAAGTTGATGGTCCTGCTGCATATGACATTCTCACCAATTTCGAGGAACGTTGGTTAAGAGCATTAAAAATGACTACACTTCTAAAGATAAAAACTTCAAATGATGATTCATTACTGAAAATCGATAGAATCTCAGACATTGTTAGCATTGATGAAGTTCCTTACCTAGATGAACATAACCAACAAGAGACTTGGCATGTCCAGATCTTCCGTTCGATCGATTCCAACTCTGTGAAAAGATTTCCAAAAGAACCAAAAGAAGCTATACAAAGGAACTTGGTTTGTGGAAAGAATGTAATGATAGACATGAGCATACATTCTGCATATGTCAAAGCAATCAGATCAGCACAGAAGTTCATTTACATTGAGAATCAATATTTTCTCGGCTCATCGTATAATTGGGATTCTTACAAAGACCTCGGTGCAAACAACTTAATCCCAATGGAAATTGCGCTAAAAATAGCGAACAAAATCAAACAGAAAGAGAGATTCAGTGTCTACATTGTGATTCCTATGTGGCCTGAAGGTGTACCTTCAAGTATAACTACTCAAAGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGCAACAATTTACAAGGCCTTAGAGGAAGCTGGACTCGAAAATCAGTATGAACCGCAGGACTACTTGAACTTCTTTTGCCTTGGCAATCGCGAGCTCCCCGATAATGATAGCATTTCGAATCCTATAAAACAGAACGGACAAAACGCTCCGCAGGTACTAGCTCAAAGGAATACAAGATTCATGATTTATGTTCATTCGAAAGGAATGATAGTGGATGATGAATATGTGTTGATGGGATCTGCCAACATAAACCAGAGATCCATGGAAGGCACTAGAGACACTGAGATTGCAATGGGAGCATATCAGCCTAATCATACTTGGGCAACAAGCAAATCCAAACCTCATGGCCAGGTGCATGGTTATAGGATGTCATTGTGGAGTGAGCACATAGGAGGTGTGGAAGAGTGTTTCAAGGAACCAGAGAGTGTTGAATGTGTGAGAAGGATAAGAGGTTTGAGTGAGTATAACTGGAGACAATATGTGGCTGATGAAGTAACTGAAATGAAAAGTCATTTACTGAAATACCCTCTTGAGGTTGATTCAAAGGGCAATGTGAATCCTCTTGTTGGGTGTGAAACATTCCCTGATGTTGGTGGGAAGATAAAGGGAACCTTTGTTGTAGTTCAAGAAAATCTCACCATATAA 2559 0.3896 MSHLVYGETQSFGDSHHGQGRQHVPFPTNSSSLRILLLHGNLEICIKEAKNLPNMDTFHKAMGDMFSFLPTKLSGKIEGKMSQNLTSDPYVTVSIAGNVIARTFIIRNDENPVWMQHFNVPVAHLASEIHFVVKDNDVVGSQVIGAVGIPVENLCNGSKLEGFFPILNTNGKPFKTDTVLGLSIQYTPVDKVTLYSNGVGEDYQGVPATYFPLRKGGKVTLYQDAHVPQDSLPSLKVDDVSCYENGNCWHDIFDAISHACRLVYIVGWSVYYNVSLIRDTRDGKDYSLGELLKAKSQEGVRVLLLVWDDLTSNTVLGYKTVGLMNTYDEETRRFFKHSSVRVLLCPRSGGKGHSWVKQQEAGTIYTHHQKTVIVDADAGHHKRKIVAFIGGLDLCLGRYDTPEHSLFRTLQTTHKDDFYNNNFEGSASGCPRQPWHDLHSKVDGPAAYDILTNFEERWLRALKMTTLLKIKTSNDDSLLKIDRISDIVSIDEVPYLDEHNQQETWHVQIFRSIDSNSVKRFPKEPKEAIQRNLVCGKNVMIDMSIHSAYVKAIRSAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIANKIKQKERFSVYIVIPMWPEGVPSSITTQRILFWQFKTMQMMYATIYKALEEAGLENQYEPQDYLNFFCLGNRELPDNDSISNPIKQNGQNAPQVLAQRNTRFMIYVHSKGMIVDDEYVLMGSANINQRSMEGTRDTEIAMGAYQPNHTWATSKSKPHGQVHGYRMSLWSEHIGGVEECFKEPESVECVRRIRGLSEYNWRQYVADEVTEMKSHLLKYPLEVDSKGNVNPLVGCETFPDVGGKIKGTFVVVQENLTI 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07837 852 Gene3D C2 domain 35 176 IPR035892 -
Vifa1g07837 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 698 725 IPR001736 GO:0003824
Vifa1g07837 852 Gene3D Endonuclease Chain A 237 481 - -
Vifa1g07837 852 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Vifa1g07837 852 Pfam PLD-like domain 550 734 IPR025202 -
Vifa1g07837 852 PIRSF PLD_plant 27 852 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa1g07837 852 Pfam Phospholipase D C terminal 772 842 IPR024632 -
Vifa1g07837 852 SUPERFAMILY Phospholipase D/nuclease 206 464 - -
Vifa1g07837 852 FunFam Phospholipase D delta 239 477 - -
Vifa1g07837 852 CDD C2_plant_PLD 36 187 - -
Vifa1g07837 852 Pfam C2 domain 40 166 IPR000008 -
Vifa1g07837 852 Gene3D Endonuclease Chain A 502 753 - -
Vifa1g07837 852 SMART C2_3c 41 163 IPR000008 -
Vifa1g07837 852 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g07837 852 SMART pld_4 698 725 IPR001736 GO:0003824
Vifa1g07837 852 SMART pld_4 363 398 IPR001736 GO:0003824
Vifa1g07837 852 ProSiteProfiles C2 domain profile. 20 164 IPR000008 -
Vifa1g07837 852 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 38 189 IPR035892 -
Vifa1g07837 852 FunFam Phospholipase D 512 744 - -
Vifa1g07837 852 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Vifa1g07837 852 SUPERFAMILY Phospholipase D/nuclease 545 781 - -
Vifa1g07837 852 PANTHER PHOSPHOLIPASE D 32 841 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07837 Vifa-Chr1 1224061352 1224065131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07837 32 852 Phospholipase D Gene Family (Wang group) AT2G42010 66.313 0.0 1203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07837 K01115 - gmx:100786241 1434.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07837 1 1224061352 1224065131 Vifa1g07837 1 1224061352 1224065131 ECH