Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07836 ATGCAAGAACCAAGCTTAGGAATGATGCAAGGTGGTGCTTGTTACGGTGGAGACGGTGGTGGTGGTGGTGGTGGTGGTGACAACAAGCGACAACTCAAGGCGGAGATAGCTACACATCCTTTATATGAACAGCTTCTGTCTGCACATGTGGCTTGTCTTCGAGTTGCAACTCCTATAGATCAGTTACCATTGATTGATGCACAGTTATCTCAATCTCATCATCTTCTACGATCTTATATCTCTCAACAAACTCATTCTCTTTCACCGCATGATCGTCAACAACTCGACAACTTCCTCGCACAATATTTGATAGTTTTGTGTAGTTTCAAAGAACAGCTTCAACAACATGTTAGAGTTCATGCTGTTGAGGCTGTTATGGCTTGCCGTGATATTGAAAATACCTTACAAGCCCTTACTGGAGTGAGTTTGGGAGAAGGAAGCGGCGCAACAATGTCTGACGATGAAGATGAACAATTGCAGATGGATTATTGTTTAGATAATCAATCTAGTATCGGTGGTGGTGGTGATCATGACATGATGGGACTTGGTCCATTACTTCCTACTGAATCTGAACGGTCACTTATGGAAAGAGTTCGTCAAGAACTCAAAATTGAACTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTAAGAGAGGAAATATTAAGGAAAAGAAGAGCTGGAAAATTACCGGGTGACACAACTTCTGTCTTGAAGAATTGGTGGCAGCAACATGCAAAGTGGCCTTATCCAACTGAAGACGATAAAGCAAAACTTGTGGAGGAAACAGGATTGCAACTGAAGCAAATAAACAATTGGTTTATAAACCAAAGGAAACGAAATTGGCATAGCAATTCTCAATCTGTTACCTCTTTGAAATCCAAACGCAAGAGGTAG 897 0.4136 MQEPSLGMMQGGACYGGDGGGGGGGGDNKRQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYISQQTHSLSPHDRQQLDNFLAQYLIVLCSFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGSGATMSDDEDEQLQMDYCLDNQSSIGGGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07836 298 Pfam KNOX2 domain 88 139 IPR005541 GO:0003677|GO:0005634
Vifa1g07836 298 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Vifa1g07836 298 Gene3D - 220 294 - -
Vifa1g07836 298 SMART KNOX2_2 85 140 IPR005541 GO:0003677|GO:0005634
Vifa1g07836 298 FunFam homeobox protein knotted-1-like 3 isoform X1 222 283 - -
Vifa1g07836 298 SUPERFAMILY Homeodomain-like 223 288 IPR009057 -
Vifa1g07836 298 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
Vifa1g07836 298 Pfam KNOX1 domain 32 73 IPR005540 GO:0003677|GO:0005634
Vifa1g07836 298 CDD homeodomain 224 285 IPR001356 GO:0003677
Vifa1g07836 298 SMART HOX_1 223 288 IPR001356 GO:0003677
Vifa1g07836 298 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 285 - -
Vifa1g07836 298 SMART KNOX1_2 30 74 IPR005540 GO:0003677|GO:0005634
Vifa1g07836 298 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07836 Vifa-Chr1 1223479461 1223482304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07836 1 297 Homeobox Transcription Factor Family AT1G62990 79.461 2.39e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa1g07836 KNOX2 8.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07836 - - tpra:123907403 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07836 1 1223479461 1223482304 Vifa1g07836 1 1223479461 1223482304 ECH