Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07828 ATGGCATATCAAAACTCAATTACCTTGAAAGTTTCAGTATTGTTAATAGTTTTACTAGGAGTCGAGGCTAGGGATTTCTCTTTTTTTCCTCACAAAACCGTTATAATTAGGAATGACATTTCCCCACATCCAACCGCTTTAGATCTCATTGTTCATTGCAAATCAAAAGATGATGATCTTGGATTTCACACACTTGCATTTGGAGGAACTTACTCGTTTGAGTTTAGGCCATTATTTTCTCCAAAATTAGGTAAAACTTTATTCTTTTGTAGCTTTACATGGAAAGGAAACGCCAATCCTCACTATCTTAACGTTTACAATCAAGATGTGGATGACTGCAAAGTTTGTAATTGGAAAATAAATACAACTGGTGGTTGTAACGATTTTAAAGGATATGAGGAATGTCGAAAATGGGAGGCGGCATTTGACTAG 432 0.3542 MAYQNSITLKVSVLLIVLLGVEARDFSFFPHKTVIIRNDISPHPTALDLIVHCKSKDDDLGFHTLAFGGTYSFEFRPLFSPKLGKTLFFCSFTWKGNANPHYLNVYNQDVDDCKVCNWKINTTGGCNDFKGYEECRKWEAAFD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07828 143 PANTHER - 29 128 IPR010264 -
Vifa1g07828 143 Pfam Plant self-incompatibility protein S1 33 138 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07828 Vifa-Chr1 1222082754 1222083185 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07828 30 126 Carbohydrate Esterase AT3G16970 44.660 5.29e-21 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07828 - - psat:127105312 159.458