Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07805 ATGAGAATACACTGTCATATTCATCTTTCTCATGCTCTATTATGCTTCATTCTCTGTTTGTTTTGGTCTACTCTCACGGTTTCAACAGAAACTGAGAAGGAGATTTTACTTCAGTTCAAGGGTAACATCACAGAAGATCCACACAATACCTTGAGTTCATGGGTTTCAAGTGGAGACCCTTGTCAAGGTTATAAAGGTATTTTCTGTAACTTGGAAGGTTTTGTTGAAAGAATAGTGCTTTGGAATACTAGCTTGGGAGGAGTGTTGTCTCCAGCACTGTCAGGATTGAAGAGGGTGAGGATATTGACATTGTTTGGGAATCGGTTTTCGGGTAATATCCCGGATGGATATGCTGATCTTCATTCACTGTGGAAGATCAATTTTAGCTCCAATGCGTTATCTGGTTCGATCCCCGATTTCATTGGCGATTTGCCGAACATTCGATTTCTAGACTTATCGAAGAATGGCTTCGATGGGGAGATACCTTCTGCTTTGTTTAGGTACTGCTATAAAACCAAGTTTGTTTCTCTTTCTCATAACAACCTTGTTGGTTCAATTCCTTTATCGTTGGTGAATTGCGTCAACCTTGAAGGTTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTCCCTTCTAGACTCTGTGATATTCCCGTGTTATCATATGTATCTCTGAGAAGCAATGCCTTATCGGGTAGTGTGAAAGATCGCATTTCTTCATGCCATAGTTTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATTTGGCTCCATTCAGCATCCTTGGAATGCAAAATCTTACTTACTTCAATATATCCTATAATCGGTTTGAAGGAGAAATTCCTGATATTACTTCATGTAGTGAGAGATTAGAGATCTTTGATGCTTCGGCGAATAATTTGGATGGGGTGATTCCATCCAGTATAACTAGATGCAAGAACTTGAAACTCTTGTCATTGGAGTTGAATAAGCTGAAAGGGAGTATCCCTGTTGATATTCCGGAATTGCGAGGATTATTGGTTATCAAATTGGGCAATAACTCGATAGATGGAATGATTCCCAAGGGGTTCGGCAATATTGAGCTTCTTGAATTGCTGGATTTGAGCAACCTAAACCTTGTTGGCGAAATTCCGGTTGATATAACAAATTGCAAGTTTCTTCTTGAGCTGGACGTTTCTGGTAATAACTTAGACGGCGAAATTCCACAGGCCGTTTACAAAATGACGAATCTGGAAGCCCTTGACGTACATTATAACAAGCTTAAGGGAAGCATCCCATCGAGCCTAGGAAACATATCAAGGATCGAATACCTAGATCTATCGCATAATTCACTTTCTGGTTCAATCCCTCCTTCCCTTGGAGATTTAAACAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTAATAATGCAAATATACAGAATTTTGGTGCACCTGCGTTCTCCAATAATCCTTTTCTCTGTGGCGCTCCGTTAGATACCCGTTGCTCAGAAAACGGAACTAGATCACCGTCTTCAGCTTCTGGGAAAACTAAACTTCTCAGTGTCTCTGCAATTATTGCTATTGTAGCTGCAGCTGTAATTCTTACCGGGGTTTGTTTGGTGACCATCATGAATATTAGAGCCCGACGTAAAAAAAAAGACGACGATGAGGTTATGATCGTTGAGAGTACACCTCTAACATCGTCAGAATCAAGTGTTATTATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCGTCAAAATACGAAGATTGGGAGGCAGGCACCAAAGCATTGCTCGACAAAGAGTCTTTGATAGGCGGAGGATCGATTGGTACGGTCTACAAAACCGATTTCGAAGGTGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTTTAGGAAGAATTGGAAATCAAGAGGAGTTTGAACATGAAATTGGGCGACTAGGAAACCTTCAGCACCATAATTTAGTTGCTTTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCGGAGTTTGTTTCAAACGGGAATCTCTATGATAATCTACACGGTCTTGGCTATCCTGGAACCAGCACTAGTAGAGGCAATAGGGAGTTAGATTGGCCTCGAAGGTTCCAAATTGCACTTGGAACTGCAAGGGCTCTTGCCTATCTCCACCACGACTGTCGTCCTCCAATCCTTCACCTCAACCTTAAATCCTCTAACATACTCTTAGATGACAAGTATGAAGCCAAGTTATCTGATTATGGATTAGGTAAGTTGCTACCGATTTTGGATAACTACGTTCTGACCAAATTCCACAATGCTGTTGGGTATGTTGCACCAGAGTTGGCTCAAAGTTTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTCGGCGTCATTCTTTTGGAGTTAGTTACAGGGAGGAAGCCTGTAGAAAGTCCAACCACAAATGAGGTTGTGGTTTTGTGTGAATACGTGAGAGGTTTGTTGGAGACTGGCTCGGTTTCAAATTGCTTTGACAGGAATTTACTGGGATTTGCGGAGAATGAAATGATTCAGGTTATGAAACTGGGGCTAATTTGTACTTCAGAGGATCCTTTAAGAAGACCAAGCATGGCTGAAGTTGTTCAGGTCCTTGAGTCCATCAGAAATGGATTGGAATCTCATTAA 2670 0.4082 MRIHCHIHLSHALLCFILCLFWSTLTVSTETEKEILLQFKGNITEDPHNTLSSWVSSGDPCQGYKGIFCNLEGFVERIVLWNTSLGGVLSPALSGLKRVRILTLFGNRFSGNIPDGYADLHSLWKINFSSNALSGSIPDFIGDLPNIRFLDLSKNGFDGEIPSALFRYCYKTKFVSLSHNNLVGSIPLSLVNCVNLEGFDFSFNNLSGVVPSRLCDIPVLSYVSLRSNALSGSVKDRISSCHSLMHLDFGSNRFTDLAPFSILGMQNLTYFNISYNRFEGEIPDITSCSERLEIFDASANNLDGVIPSSITRCKNLKLLSLELNKLKGSIPVDIPELRGLLVIKLGNNSIDGMIPKGFGNIELLELLDLSNLNLVGEIPVDITNCKFLLELDVSGNNLDGEIPQAVYKMTNLEALDVHYNKLKGSIPSSLGNISRIEYLDLSHNSLSGSIPPSLGDLNNLTHFDLSFNNLSGVIPNNANIQNFGAPAFSNNPFLCGAPLDTRCSENGTRSPSSASGKTKLLSVSAIIAIVAAAVILTGVCLVTIMNIRARRKKKDDDEVMIVESTPLTSSESSVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGGISIAVKKLETLGRIGNQEEFEHEIGRLGNLQHHNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLGYPGTSTSRGNRELDWPRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDDKYEAKLSDYGLGKLLPILDNYVLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETGSVSNCFDRNLLGFAENEMIQVMKLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07805 889 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vifa1g07805 889 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 168 506 - -
Vifa1g07805 889 Gene3D Ribonuclease Inhibitor 28 169 IPR032675 -
Vifa1g07805 889 Gene3D Ribonuclease Inhibitor 173 510 IPR032675 -
Vifa1g07805 889 PANTHER OS05G0588300 PROTEIN 211 334 - -
Vifa1g07805 889 Gene3D Phosphorylase Kinase; domain 1 569 677 - -
Vifa1g07805 889 Pfam Protein kinase domain 603 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07805 889 ProSiteProfiles Protein kinase domain profile. 601 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07805 889 Gene3D Transferase(Phosphotransferase) domain 1 678 888 - -
Vifa1g07805 889 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 678 888 - -
Vifa1g07805 889 SUPERFAMILY L domain-like 76 211 - -
Vifa1g07805 889 SUPERFAMILY Protein kinase-like (PK-like) 602 880 IPR011009 -
Vifa1g07805 889 FunFam Putative LRR receptor-like serine/threonine-protein kinase 578 677 - -
Vifa1g07805 889 CDD STKc_IRAK 607 882 - -
Vifa1g07805 889 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 29 167 - -
Vifa1g07805 889 Pfam Leucine rich repeat 390 446 IPR001611 GO:0005515
Vifa1g07805 889 SUPERFAMILY L domain-like 166 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07805 Vifa-Chr1 1218922545 1218925313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07805 31 888 Receptor kinase-like Gene Family AT1G62950 65.398 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vifa1g07805 Pkinase 1.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07805 - - mtr:11437247 1566.59