Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07803 ATGCACCGCATGTTTGTTTCGGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTTCAGAAATATAGACTCTATCTGAAAAAAGTCAGTTGTGGGGAAAACCAACAAGCTAATATGTCAGCAGCCTTAGGAAGTTCTGCAGATACATCCTTTTTCAGAATGAATTCTCTCAATGGAGTTGGAGGACATTTGCCAACAATGAATGGCGGCTCTACGCAGTTTCACAATAATCCATTCAGACCCTTTCAATCAAGCGGCATGAGTAACAACAGGCTGAACACACCTGCTAGTGTCAATATTCAAGGATCTTTCTAA 378 0.4101 MHRMFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKVSCGENQQANMSAALGSSADTSFFRMNSLNGVGGHLPTMNGGSTQFHNNPFRPFQSSGMSNNRLNTPASVNIQGSF 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07803 125 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 105 IPR044841 GO:0003700|GO:0006355
Vifa1g07803 125 FunFam Two-component response regulator 1 51 - -
Vifa1g07803 125 SUPERFAMILY Homeodomain-like 1 49 IPR009057 -
Vifa1g07803 125 Gene3D - 1 51 - -
Vifa1g07803 125 MobiDBLite consensus disorder prediction 105 125 - -
Vifa1g07803 125 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 45 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07803 Vifa-Chr1 1218792600 1218792977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07803 1 122 Response Regulator Gene Family AT2G25180 51.613 1.40e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g07803 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07803 - K14491 psat:127097478 234.958