Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07792 ATGGATCAAATTACTTCACATGGCCATTCACTTCCTCCACCTTTCCATACAGCAAGAGATCTTCATCTTCATCACCAACAGCAACAACAGCAGCAGCAACAGCAACACCATCAATTCCATGCTTTACAGCAACAACATACCACAGATCAAGATGAACAAAGTGGAAGCAGCAGCGGCGGAGGACTCAACCTCACAAACCGCGAAGAAAACAGCAAGTTCAACAGCGATTTTAACGCGAAACTAGAATCCGGAGGAGGTTCCGGTGGCGATAATGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCCGGATCCAAGAACAAACCAAAACCACCAATCATCATCACACGTGACAGCGCAAACGCCTTGAAAACTCACGTCATGGAAGTTGCAGACGGTTGCGACGTCGTTGAAAGTGTCAACAACTTCGCTAGACGCCGTCAGAGAGGCGTTTGCATCATGAGCGGAACCGGAACTGTTACAAACGTGACACTAAGGCAACCGGCTTCGTCTGGAGCTGTAGTCACTCTTCACGGACGGTTCGAGATTTTGTCGCTAGCCGGATCGTTTCTTCCGCCGCCGGCTCCGCCTGCTGCTTCTGGTTTGACTATATATTTGGCAGGAGGACAAGGACAGGTTGTTGGTGGAAGTGTTGTTGGTGCTCTGATTGCTTCTGGACCTGTTGTTATCATGTCTGCTTCTTTCAGTAACGCTGCTTATGAGAGACTTCCTTTGGAGGATGATGATGGTTCTTCTTTGCAACAACTTCAAGGTGGGGGTGGGGGTGGTTCTCCAAGTGGTGGTGGTGGAGGCGGTGGTGTTCAACAGACCCAGCTTTTGGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCCACCTCCAAATTCTAATCATAATCCCAATCTTCTCAATTCTGTTCAGATGCCTTCTGATAATTTCTGGCCAACTGGTCGATCTCCGTATTAA 969 0.483 MDQITSHGHSLPPPFHTARDLHLHHQQQQQQQQQQHHQFHALQQQHTTDQDEQSGSSSGGGLNLTNREENSKFNSDFNAKLESGGGSGGDNDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDDDGSSLQQLQGGGGGGSPSGGGGGGGVQQTQLLGDSTAPLFQAMPPPPNSNHNPNLLNSVQMPSDNFWPTGRSPY 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07792 322 ProSiteProfiles PPC domain profile profile. 120 257 IPR005175 -
Vifa1g07792 322 MobiDBLite consensus disorder prediction 248 322 - -
Vifa1g07792 322 MobiDBLite consensus disorder prediction 300 322 - -
Vifa1g07792 322 MobiDBLite consensus disorder prediction 270 284 - -
Vifa1g07792 322 FunFam AT-hook motif nuclear-localized protein 123 250 - -
Vifa1g07792 322 MobiDBLite consensus disorder prediction 24 81 - -
Vifa1g07792 322 Gene3D - 123 257 - -
Vifa1g07792 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Vifa1g07792 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 316 IPR014476 GO:0003680
Vifa1g07792 322 CDD DUF296 124 191 IPR005175 -
Vifa1g07792 322 MobiDBLite consensus disorder prediction 1 114 - -
Vifa1g07792 322 PIRSF ESCAROLA 13 322 IPR014476 GO:0003680
Vifa1g07792 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07792 Vifa-Chr1 1217472711 1217473679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07792 1 322 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.519 2.17e-83 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07792 - - tpra:123911246 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07792 1 1217472711 1217473679 Vifa1g07792 1 1217472711 1217473679 ECH