Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07774 ATGAATTTCTTCCATCTTCTCCTTTCTATGTTTCTATTGATTTCATTTTTAACTCTACAAACTGTTTGTGGAAATGCTGAGCTCAGGGCTTTGATGGACTTGAAATCCTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGTAGGGGTTGCTTGCAATGATCATTGGAAAGTGGCCAATATTTCTTTGCAGGGAAAGGGACTTTCTGGTTCATTATCTCCGGTTGTTGCTGAACTTAAATGCTTGTCAGGGTTATACTTGCATTACAACAATCTTTCTGGTGAGATACCATCACAGATTTCAAATCTCACTGATCTTGTTGATCTTTATCTTGATGTTAATAGTTTATCTGGAACAATTCCTCCTGAGTTTGGCAACATGGCTAGTCTCCAAGTACTCCAGTTGGGAGATAATCAATTGGTGGGGAATATACCTACGCAGATGGGTTCCTTGAAGCAGCTTACTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGAACCTGGAGAAACTAAGCAGGCTAAATTTGAGCTTCAACAACTTTAGTGGTACTATTCCTGCAACACTAGCCAATGTTGCTCATTTGAAAGTATTGGATATTCAAAACAATTCTCTATCAGGAATTGTTCCTTCTGCATTGAAGAGACTTGGAGAAGGATTCCAAGGGGCAAACAATCAAGGTTTATGCGGAGTAGGGCTTTCTACTTTGAGAGCTTGCAACAAGGATCCAGATTTCAACGTCAGTGACATTGACACCTCAAATCGAGATCACCCCGACAATAGTGATCCTGCAACGGCTCGCCCGGAGCCTGCTGATATCCAAATGCATTGTGCTGGATTGTTTACATTCGTCAAATACCGCCGTCAAAAGCAGAAGATTTCATCGAACTATTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGATTTATACAGAAAAAGCCCGTCCACTCTTGTTAATCTTGACTACTATAATGGATGTTATCCATTGCCCAATGATCAAAAAGCTGGTGGATTAGCCAATGAATATCTAAACCAATTCAGGTATAATGTAGACGAAGTCGAGTCTGCAACGCAATATCTTTCAGAAGCAAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTAGCTATTAGAAGCATTAACATGACATGTTGCAAAACCGAGGAAGCTGAATTTGCAAAGGGATTGAGCTTATTATCCTCACTTAGACATGAAAACGTTGTTAAGCTAAGAGGCTTCTGTTGCTCAAGTAGTAGAGGTGAATGCTACCTTATTTATGACTTTGCCACTATGGGCGACCTGTCTCAATATCTTGACATGGAAGATAGAAGTGGCCATTTGCTTGATTGGTCCAAGAGAGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAGCAAACCTACATTAGTACACCAGAATATTTCAGTAGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCTGGACTTCCGAAACTTCTCGCAGAAGACGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACTGGTCGCTTTACCGAAAAGAGTGACATATACGCATTCGGGGTTATTGTACTCCAAGTTTTATCAGGCAAGACAGCGATAGGTGGTTCGATACGGACAGCGTTTGAGTCTCTCAGATTTGATGATTGCATTGACACAAATCTTAATGGAACATATTCTAGTTCAGAAGCAAAGACGCTTACAAAGCTTGGAGTACAGTGTGTCCATGAAAGCCCCGACGAAAGACCAAACATGGTGGATGTGATTCAGGAGCTAAGCGTGTTTCCGGCTCATTCAAAATGA 1962 0.4072 MNFFHLLLSMFLLISFLTLQTVCGNAELRALMDLKSSLDPEGKILTSWISDGNPCSGSFVGVACNDHWKVANISLQGKGLSGSLSPVVAELKCLSGLYLHYNNLSGEIPSQISNLTDLVDLYLDVNSLSGTIPPEFGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPLSLGNLEKLSRLNLSFNNFSGTIPATLANVAHLKVLDIQNNSLSGIVPSALKRLGEGFQGANNQGLCGVGLSTLRACNKDPDFNVSDIDTSNRDHPDNSDPATARPEPADIQMHCAGLFTFVKYRRQKQKISSNYSEGKLSPQQPKDLYRKSPSTLVNLDYYNGCYPLPNDQKAGGLANEYLNQFRYNVDEVESATQYLSEANLLCKSKFSAMYKGVLRDGSLVAIRSINMTCCKTEEAEFAKGLSLLSSLRHENVVKLRGFCCSSSRGECYLIYDFATMGDLSQYLDMEDRSGHLLDWSKRVSIIKGIAKGIGYLHSNEASKPTLVHQNISVENVLLDKEFNPLIMDAGLPKLLAEDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLNGTYSSSEAKTLTKLGVQCVHESPDERPNMVDVIQELSVFPAHSK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07774 653 SUPERFAMILY L domain-like 23 233 - -
Vifa1g07774 653 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
Vifa1g07774 653 ProSiteProfiles Protein kinase domain profile. 380 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07774 653 Gene3D Ribonuclease Inhibitor 181 245 IPR032675 -
Vifa1g07774 653 Gene3D Ribonuclease Inhibitor 24 180 IPR032675 -
Vifa1g07774 653 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 368 646 - -
Vifa1g07774 653 Pfam Protein tyrosine and serine/threonine kinase 385 645 IPR001245 GO:0004672|GO:0006468
Vifa1g07774 653 Gene3D Transferase(Phosphotransferase) domain 1 460 648 - -
Vifa1g07774 653 MobiDBLite consensus disorder prediction 267 282 - -
Vifa1g07774 653 SMART LRR_typ_2 187 210 IPR003591 -
Vifa1g07774 653 SMART LRR_typ_2 91 115 IPR003591 -
Vifa1g07774 653 SMART LRR_typ_2 139 163 IPR003591 -
Vifa1g07774 653 SMART LRR_typ_2 211 234 IPR003591 -
Vifa1g07774 653 Gene3D Phosphorylase Kinase; domain 1 352 458 - -
Vifa1g07774 653 FunFam Protein NSP-INTERACTING KINASE 2 459 649 - -
Vifa1g07774 653 FunFam Protein NSP-INTERACTING KINASE 2 351 458 - -
Vifa1g07774 653 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Vifa1g07774 653 MobiDBLite consensus disorder prediction 264 288 - -
Vifa1g07774 653 SUPERFAMILY Protein kinase-like (PK-like) 361 646 IPR011009 -
Vifa1g07774 653 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07774 Vifa-Chr1 1213325820 1213328780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07774 6 493 Miscellaneous Gene Families AT4G22730 53.321 2.98e-180 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vifa1g07774 PK_Tyr_Ser-Thr 6.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07774 - - gmx:100777169 1007.28