Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07773 ATGAATTTCTTCCATCTTCTCCTTTCTATGTTTCTATTGATTTCATTTTTAACTCTACAAACTGTTTGTGGAAATGCTGAGCTCAGGGCTTTGATGGACTTGAAATCCTCTCTTGATCCAGAGGGAAAGATTCTTACTTCATGGATCAGTGATGGTAATCCATGTAGTGGTTCATTTGTAGGGGTTGCTTGCAATGATCATTGGAAAGTGGCCAATATTTCTTTGCAGGGAAAGGGACTTTCTGGTTCATTATCTCCGGTTGTTGCTGAACTTAAATGCTTGTCAGGGTTATACTTGCATTACAACAATCTTTCTGGTGAGATACCATCACAGATTTCAAATCTCACTGATCTTGTTGATCTTTATCTTGATGTTAATAGTTTATCTGGAACAATTCCTCCTGAGTTTGGCAACATGGCTAGTCTCCAAGTACTCCAGTTGGGAGATAATCAATTGGTGGGGAATATACCTACGCAGATGGGTTCCTTGAAGCAGCTTACTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAAATTCCCCTTAGCTTGGGGAACCTGGAGAAACTAAGCAGGCTAAATTTGAGCTTCAACAACTTTAGTGGTACTATTCCTGCAACACTAGCCAATGTTGCTCATTTGAAAGTATTGGATATTCAAAACAATTCTCTATCAGGAATTGTTCCTTCTGCATTGAAGAGACTTGGAGAAGGATTCCAAGGGGCAAACAATCAAGGTTTATGCGGAGTAGGGCTTTCTACTTTGAGAGCTTGCAACAAGGATCCAGATTTCAACGTCAGTGACATTGACACCTCAAATCGAGATCACCCCGACAATAGTGATCCTGCAACGGCTCGCCCGGAGCCTGCTGATATCCAAATGCATTGTAATCAGACTCATTGCTCAAAATCAAGAAGGCTTCCTTTAAGTGCCATCACAACAGCAAGTGCTATAATCATCACTCTCGTATTCATAGGTGCTGGATTGTTTACATTCGTCAAATACCGCCGTCAAAAGCAGAAGATTTCATCGAACTATTCTGAAGGGAAACTTAGTCCTCAGCAGCCTAAAGATTTATACAGAAAAAGCCCGTCCACTCTTGTTAATCTTGACTACTATAATGGATGTTATCCATTGCCCAATGATCAAAAAGCTGGTGGATTAGCCAATGAATATCTAAACCAATTCAGGTATAATGTAGACGAAGTCGAGTCTGCAACGCAATATCTTTCAGAAGCAAATTTATTGTGTAAGAGCAAATTCTCAGCAATGTATAAAGGAGTTCTCAGAGATGGTTCTCTTGTAGCTATTAGAAGCATTAACATGACATGTTGCAAAACCGAGGAAGCTGAATTTGCAAAGGGATTGAGCTTATTATCCTCACTTAGACATGAAAACGTTGTTAAGCTAAGAGGCTTCTGTTGCTCAAGTAGTAGAGGTGAATGCTACCTTATTTATGACTTTGCCACTATGGGCGACCTGTCTCAATATCTTGACATGGAAGATAGAAGTGGCCATTTGCTTGATTGGTCCAAGAGAGTTTCTATCATCAAGGGCATTGCAAAGGGTATTGGATATCTGCACAGCAATGAAGCAAGCAAACCTACATTAGTACACCAGAATATTTCAGTAGAGAATGTTCTCCTTGACAAAGAGTTTAATCCATTGATCATGGATGCTGGACTTCCGAAACTTCTCGCAGAAGACGTTGTTTTCTCAGCTCTAAAAGTAAGTGCTGCCATGGGATACCTAGCTCCTGAATACATTACTACTGGTCGCTTTACCGAAAAGAGTGACATATACGCATTCGGGGTTATTGTACTCCAAGTTTTATCAGGCAAGACAGCGATAGGTGGTTCGATACGGACAGCGTTTGAGTCTCTCAGATTTGATGATTGCATTGACACAAATCTTAATGGAACATATTCTAGTTCAGAAGCAAAGACGCTTACAAAGCTTGGAGTACAGTGTGTCCATGAAAGCCCCGACGAAAGACCAAACATGGTGGATGTGATTCAGGAGCTAAGCGTGTTTCCGGCTCATTCAAAATGA 2052 0.4064 MNFFHLLLSMFLLISFLTLQTVCGNAELRALMDLKSSLDPEGKILTSWISDGNPCSGSFVGVACNDHWKVANISLQGKGLSGSLSPVVAELKCLSGLYLHYNNLSGEIPSQISNLTDLVDLYLDVNSLSGTIPPEFGNMASLQVLQLGDNQLVGNIPTQMGSLKQLTTLALQYNKLTGQIPLSLGNLEKLSRLNLSFNNFSGTIPATLANVAHLKVLDIQNNSLSGIVPSALKRLGEGFQGANNQGLCGVGLSTLRACNKDPDFNVSDIDTSNRDHPDNSDPATARPEPADIQMHCNQTHCSKSRRLPLSAITTASAIIITLVFIGAGLFTFVKYRRQKQKISSNYSEGKLSPQQPKDLYRKSPSTLVNLDYYNGCYPLPNDQKAGGLANEYLNQFRYNVDEVESATQYLSEANLLCKSKFSAMYKGVLRDGSLVAIRSINMTCCKTEEAEFAKGLSLLSSLRHENVVKLRGFCCSSSRGECYLIYDFATMGDLSQYLDMEDRSGHLLDWSKRVSIIKGIAKGIGYLHSNEASKPTLVHQNISVENVLLDKEFNPLIMDAGLPKLLAEDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIVLQVLSGKTAIGGSIRTAFESLRFDDCIDTNLNGTYSSSEAKTLTKLGVQCVHESPDERPNMVDVIQELSVFPAHSK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07773 683 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Vifa1g07773 683 Pfam Leucine rich repeat 189 235 IPR001611 GO:0005515
Vifa1g07773 683 SUPERFAMILY L domain-like 23 233 - -
Vifa1g07773 683 FunFam Protein NSP-INTERACTING KINASE 2 381 488 - -
Vifa1g07773 683 MobiDBLite consensus disorder prediction 266 290 - -
Vifa1g07773 683 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Vifa1g07773 683 MobiDBLite consensus disorder prediction 267 282 - -
Vifa1g07773 683 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vifa1g07773 683 SMART LRR_typ_2 187 210 IPR003591 -
Vifa1g07773 683 SMART LRR_typ_2 91 115 IPR003591 -
Vifa1g07773 683 SMART LRR_typ_2 139 163 IPR003591 -
Vifa1g07773 683 SMART LRR_typ_2 211 234 IPR003591 -
Vifa1g07773 683 Gene3D Ribonuclease Inhibitor 180 245 IPR032675 -
Vifa1g07773 683 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Vifa1g07773 683 ProSiteProfiles Protein kinase domain profile. 410 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07773 683 Pfam Protein tyrosine and serine/threonine kinase 415 675 IPR001245 GO:0004672|GO:0006468
Vifa1g07773 683 SUPERFAMILY Protein kinase-like (PK-like) 391 676 IPR011009 -
Vifa1g07773 683 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 309 676 - -
Vifa1g07773 683 Gene3D Transferase(Phosphotransferase) domain 1 490 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07773 Vifa-Chr1 1213325820 1213328780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07773 6 523 Miscellaneous Gene Families AT4G22730 56.061 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vifa1g07773 PK_Tyr_Ser-Thr 6.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07773 - - gmx:100777169 1047.34