Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa1g07761 | ATGAGTAACGGCTACTCGACTACTCCAAAACTAGCCATTCTTCACAAATCGTCCCTATCAGTTTCATCAACTCTTCACTTTCCCTTTTTTCTCTCTCGAAGAATCAAAAGGGGAAAACCCTTTAAGCCCATTTCATCGAAAATGAATGATCTAATGACGAAATCGTTCACCAACTACGTTGATCTAAAAAAAGCAGCTATGAAAGATGAAGTAGATTTAGAAGCTGGTCTTCAAAAACCAGGTGTTAATGATGTTGAGTTAACAAGATCTTCGATAACCCATTTGGAAACTGATATGAATCTGTTCTTAGAAGAGGCAGAGAAAGTAAGAACAGAAATGGGTGAAATTCGTGATGCTCTGACGAATCTTCAACAAGCTAATGAAGAGAGCAAGTCACTTCACAAAACTGATGCTTTGAAATCATTGAGGGAAAGAATCAACACTGATATTGTAACTGTTTTGAAGAAAGCAAGGTGTATTAGGAGTCAGTTGGAAGAAATGGATCGTGCCAATGATGCTAATAGAAGACTCTCTGGACTTAAAGATGGTTCACCAGCAATTTATCGAACGAGAATTGCTGTCACCAATGGATTGCGTAAGAAGCTCAAGGAGCTTATGATGGAGTTTCAGGGACTGAGGCAGAGAATGATGAGTGAATACAAAGAGACAGTAGGGAGAAGATACTACACAGTGACAGGGGAACATGCAGATGAAGAGGTGATTGATAAGATAATATCAAATGGAGATGATGAAAGTTTTCTAGGAAAGGCGATACAAGAACATGGAAGAGGAAAAGTTCTTGAAACTGTGGTTGAGATACAAGACAGGCATGATGCTGCAAAAGAGATTGAGAAGAGTTTGTTGGAACTTCATCAAGTTTTCTTGGATATGGCTGTTATGGTTGAAGCACAAGGTGAGAAAATGGATGATATTGAACATCATGTTCTTCATTCTTCTCATTATGTTAAAGATGGTACAAAGAATCTTCATAGTGCTAAGCAGTATCAGAAAAGTGGTAGGAAGTGGATGTGCATTGGGATTATACTTTTGCTGATTCTGATTCTGGTTATTGTTATTCCCATTGTCACCAGTTTGAGTAGTTCTTGA | 1107 | 0.3821 | MSNGYSTTPKLAILHKSSLSVSSTLHFPFFLSRRIKRGKPFKPISSKMNDLMTKSFTNYVDLKKAAMKDEVDLEAGLQKPGVNDVELTRSSITHLETDMNLFLEEAEKVRTEMGEIRDALTNLQQANEESKSLHKTDALKSLRERINTDIVTVLKKARCIRSQLEEMDRANDANRRLSGLKDGSPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKETVGRRYYTVTGEHADEEVIDKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHSSHYVKDGTKNLHSAKQYQKSGRKWMCIGIILLLILILVIVIPIVTSLSSS | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa1g07761 | 368 | CDD | SynN | 102 | 246 | IPR006011 | GO:0016020 | |
| Vifa1g07761 | 368 | Pfam | SNARE domain | 307 | 358 | IPR000727 | - | |
| Vifa1g07761 | 368 | SUPERFAMILY | t-snare proteins | 97 | 325 | IPR010989 | GO:0016020|GO:0016192 | |
| Vifa1g07761 | 368 | FunFam | Syntaxin 132 | 263 | 363 | - | - | |
| Vifa1g07761 | 368 | Gene3D | - | 99 | 227 | - | - | |
| Vifa1g07761 | 368 | Pfam | Syntaxin | 102 | 305 | IPR006011 | GO:0016020 | |
| Vifa1g07761 | 368 | Coils | Coil | 195 | 215 | - | - | |
| Vifa1g07761 | 368 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 96 | 227 | - | - | |
| Vifa1g07761 | 368 | SMART | tSNARE_6 | 265 | 332 | IPR000727 | - | |
| Vifa1g07761 | 368 | ProSitePatterns | Syntaxin / epimorphin family signature. | 276 | 316 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Vifa1g07761 | 368 | SMART | SynN_4 | 94 | 221 | IPR006011 | GO:0016020 | |
| Vifa1g07761 | 368 | CDD | SNARE_syntaxin1-like | 269 | 329 | - | - | |
| Vifa1g07761 | 368 | PANTHER | SYNTAXIN | 114 | 354 | IPR045242 | - | |
| Vifa1g07761 | 368 | Coils | Coil | 106 | 136 | - | - | |
| Vifa1g07761 | 368 | Gene3D | - | 266 | 365 | - | - | |
| Vifa1g07761 | 368 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 270 | 332 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa1g07761 | Vifa-Chr1 | 1211199306 | 1211200723 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa1g07761 | 48 | 368 | SNARE and Associated Proteins | AT1G08560 | 64.286 | 4.52e-132 | 378 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa1g07761 | K08486 | - | gmx:100816016 | 485.723 |