Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07760 ATGGCAGAAGAAGCCAAAGCCAAAGGCAACGCCGCATTCTCTTCCGGCGATTTTTCAACCGCCATCCGCCACTTCTCCGAAGCCATTGATCTCGCCCCCGACAACCATGTTCTTTACTCAAACCGATCCGCAGCCTACGCTTCTCTCCAGAAATACACCGAAGCTTTAGCCGACGCCAAGAAAACCGTCCAGCTCAAACCTCAATGGGTCAAAGGCTACAGCCGCCTCGGAGCCGCTCACCTCGGTTTATCTCAATTCGATGACGCTATTGCTTCTTACAAGAAAGGTCTCGATTTTGACCCTACTAATGAGCCGCTTAAATCAGGTTTAGCCGATGCGGAGAAAGCCGCCGCTTCCGCTGCGGCTAGGTCACGTTCTGCGCCGGCTAATCCCTTTGGAGACGCTTTCAGTGGACCTGAGATGTGGGTTAAGCTGACGTCTGATCCTACGACTAGGGCTTTTCTTCAGGAACCTGATTTTGTCAAGATGATGCTTGATATTCAAAAGAATCCCAATAATCTTAATTTGTATTTGAAGGATCAGAGAGTTATGCAAGCTTTTGGGGTTTTGCTTAATGTGAAGCTCGGAAGTGCTGGTGATGATGTGGATATGCCTGATACTCCTTCTTCTTCCTCTTCCGAGAGGAAGAGAGCGGCTGAAGCTGAGGCTCCTAAGCAGCCTGAGCCTGAGCCCGAGCCCGAGCCCATGGAAGAGGTTGATGAGGAGAAGGAAGCTAAGCAGAGAAAGGCTGAGGCACAGAAGGAGAAGGAGGCTGGTAATGCGGCCTACAAAAAGAAGGATTTTGATACTGCTATTCATCATTACTCAAAAGCTTTCGAATTGGACGATGAGGATATATCGTTTCTCACCAACCGTGCTGCTGTGTATTTGGAGATGGGAAAGTATGAAGATTGCATAAAGGATTGTGACAAGGCAGTTGAAAGAGGACGAGAACTGCGATCAGACTACAAGATGGTAGCAAGAGCTTTGACAAGGAAGGGGACTGCCATGGGCAAAACTGCAAAATGCTCTAAAGATTATGAACCTGTCATTGAGACATTTCAAAAAGCACTTACAGAGCACCGCAACCCAGACACTCTAAAGAAACTTAATGAAGCTGAAAAGGCTAAGAAAGAATTAGAACAACAAGAATACTTTGACCCAAATTTGGCTGATGAGGAACGGGAAAAAGGGAATGGATTCTTTAAGCAGCAGAAGTATCCCGAAGCTATTAAGCATTACACCGAGTCTCTAAGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACCGAGCTGCATGTTACACCAAACTGGGGGCAATGCCTGAAGGTTTAAAAGATGCAGAGAAGTGCATTGAGCTTGATCCAACCTTCACCAAGGGTTATACCAGGAAAGGTGCAGTTCAGTTTTTCATGAAAGAATATGAAAAGGCTTTGGAAACATATCAGGAGGGGTTGAAACATGATGCCAACAACCAGGAGTTGCTTGATGGCATTACAAGGTGTGTACAACAAATTAACAGAGCCAGCCGTGGAGATTTAAGTCCTGAAGAGTTGAAGGATAGACAGGCCAAGGCAATGTCAGATCCGGAGATACAGAATATTCTTCAAGACCCTGTTATGCGACAGGTATTGGTTGACTTCCAGGAAAACCCCAAGGCTGCACAGGAGCATACCAAGAACCCAGGTGTGATGGACAAAATCCAAAAGTTGATCAGTGCTGGAATTGTCCAGATGAGGTAA 1743 0.4624 MAEEAKAKGNAAFSSGDFSTAIRHFSEAIDLAPDNHVLYSNRSAAYASLQKYTEALADAKKTVQLKPQWVKGYSRLGAAHLGLSQFDDAIASYKKGLDFDPTNEPLKSGLADAEKAAASAAARSRSAPANPFGDAFSGPEMWVKLTSDPTTRAFLQEPDFVKMMLDIQKNPNNLNLYLKDQRVMQAFGVLLNVKLGSAGDDVDMPDTPSSSSSERKRAAEAEAPKQPEPEPEPEPMEEVDEEKEAKQRKAEAQKEKEAGNAAYKKKDFDTAIHHYSKAFELDDEDISFLTNRAAVYLEMGKYEDCIKDCDKAVERGRELRSDYKMVARALTRKGTAMGKTAKCSKDYEPVIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPNLADEEREKGNGFFKQQKYPEAIKHYTESLRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFTKGYTRKGAVQFFMKEYEKALETYQEGLKHDANNQELLDGITRCVQQINRASRGDLSPEELKDRQAKAMSDPEIQNILQDPVMRQVLVDFQENPKAAQEHTKNPGVMDKIQKLISAGIVQMR 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Vifa1g07760 580 Coils Coil 236 262 - -
Vifa1g07760 580 SUPERFAMILY TPR-like 8 505 IPR011990 GO:0005515
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Vifa1g07760 580 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 512 580 - -
Vifa1g07760 580 Gene3D - 510 580 - -
Vifa1g07760 580 PANTHER TPR REPEAT CONTAINING PROTEIN 2 552 - -
Vifa1g07760 580 Pfam STI1 domain 139 192 IPR041243 -
Vifa1g07760 580 Pfam STI1 domain 521 572 IPR041243 -
Vifa1g07760 580 Pfam TPR repeat 398 439 - -
Vifa1g07760 580 Pfam TPR repeat 259 300 - -
Vifa1g07760 580 Gene3D - 128 195 - -
Vifa1g07760 580 FunFam Stress-induced phosphoprotein 1 1 116 - -
Vifa1g07760 580 Pfam Tetratricopeptide repeat 71 103 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 459 492 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 391 424 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 70 103 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 252 285 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 327 364 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 286 319 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 425 458 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 2 35 IPR019734 GO:0005515
Vifa1g07760 580 SMART tpr_5 36 69 IPR019734 GO:0005515
Vifa1g07760 580 MobiDBLite consensus disorder prediction 197 261 - -
Vifa1g07760 580 SMART CBM 138 177 IPR006636 -
Vifa1g07760 580 SMART CBM 529 568 IPR006636 -
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Vifa1g07760 580 FunFam Putative stress-induced-phosphoprotein 1 128 196 - -
Vifa1g07760 580 Coils Coil 363 383 - -
Vifa1g07760 580 Pfam Tetratricopeptide repeat 7 67 - -
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 391 424 IPR019734 GO:0005515
Vifa1g07760 580 FunFam hsp70-Hsp90 organizing protein 3-like 390 504 - -
Vifa1g07760 580 Gene3D Tetratricopeptide repeat domain 249 385 IPR011990 GO:0005515
Vifa1g07760 580 MobiDBLite consensus disorder prediction 213 232 - -
Vifa1g07760 580 Gene3D Tetratricopeptide repeat domain 390 509 IPR011990 GO:0005515
Vifa1g07760 580 MobiDBLite consensus disorder prediction 240 261 - -
Vifa1g07760 580 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Vifa1g07760 580 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Vifa1g07760 580 FunFam Stress-induced phosphoprotein 1 249 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07760 Vifa-Chr1 1210979034 1210982215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07760 390 486 U-box Gene Family AT3G07370 28.866 3.10e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07760 K09553 - gmx:100816776 879.011