Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07755 ATGAACAATTTCTCACATGTTCCTCCCGGATTTCGTTTCCATCCGACGGATGAAGAACTTGTTGATCACTACCTTAGGAAAAAGATAGCTTCGAAAAGAATTGATCTTGATATCATTAAAGATGTTGATCTCTATAAAATTGAGCCATGGGATCTACAAGAGTTATGCAAACTAGGAAGTGATGAACAAACTGAATGGTTTTTCTTCAGTCATAAAGACAAGAAATATCCAACTAGCAGTCGTACAAATAGAGCTACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAAGCAATATATTCTAACAATATTTGTCTGATTGGAATGAGAAAGACTCTTGTTTTCTATAAAGGAAGAGCTCCTAATGGACAGAAATCTGATTGGATCATGCATGAATATCGTTTAGAAACTAATGAAAATGGAACTACACCTCAGGAAGAAGGATGGGCTGTGTGCAAAGTGTTCAAGAAACGAATAGCTACAACAATGAGAAGAATGGATGAGTCACCATGTGGATATGATGATCAAGTATCATTCATGCAAGAGCTTGAAACACCAAACCGAGTATTTTCTTCTCATTCTTATGCATCATACCAACAACAACAACAACACTATCCTTGCAAACAGGAGTTGAATCAAATGCAATACAATATATCCATTAATGATGCTAACAATTTCCTCCAACTTCCACCACTAGAAAGCCCTAAAATACCTAATTTGCAGTGTTCATCATCATCACATTCAATAACTCATCAAGAACAACAATATTATAGCCAGCACCACCAACAAAGTATGCAAATGCTTTATGGTGGTAGCAATGATTTACAAGCAGTAGTGGAGCAATCAAAGGATTGGAGAGTATTTGACAAACATGTTGCTTCTCAGATAAGTCATGATCAAGAAGCTTCCAAGGAAACAATAAGTAGTTATTGCAATATTATTGTGGCTGAACAAATTGCTTTGCTAGCAAATGAATCAAAAAAATCTGAAACTCATGAGCAGGAATATGCTACTTCAACTTCCAACTCCAGTTGCCAGATTGATACATGGAAGTGA 1059 0.3645 MNNFSHVPPGFRFHPTDEELVDHYLRKKIASKRIDLDIIKDVDLYKIEPWDLQELCKLGSDEQTEWFFFSHKDKKYPTSSRTNRATKAGFWKATGRDKAIYSNNICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGTTPQEEGWAVCKVFKKRIATTMRRMDESPCGYDDQVSFMQELETPNRVFSSHSYASYQQQQQHYPCKQELNQMQYNISINDANNFLQLPPLESPKIPNLQCSSSSHSITHQEQQYYSQHHQQSMQMLYGGSNDLQAVVEQSKDWRVFDKHVASQISHDQEASKETISSYCNIIVAEQIALLANESKKSETHEQEYATSTSNSSCQIDTWK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07755 352 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Vifa1g07755 352 MobiDBLite consensus disorder prediction 333 352 - -
Vifa1g07755 352 FunFam Nac domain-containing protein 86 16 161 - -
Vifa1g07755 352 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Vifa1g07755 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 258 - -
Vifa1g07755 352 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Vifa1g07755 352 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Vifa1g07755 352 MobiDBLite consensus disorder prediction 336 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07755 Vifa-Chr1 1210126369 1210128044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07755 1 349 NAC Transcription Factor Family AT1G62700 53.941 1.78e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g07755 NAM 1.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07755 - - tcc:18606319 439.499