Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07726 ATGGCGGAACCGAAAGAAGAACAAGACAGCCGAGAACTCTACGCAGTATTGAATTTATCCCCCGAAGCTTCCGATGAAGAAATCCGCAAAGCATATCGTCAATGGGCGCAACTCTACCACCCCGATAAGTACCAATCTCCTAACTTAAAAGACGCTGCTACGGAGAATTTTCAACGAGTTTGTGAAGCGTATGAGATTCTGTCAGATCCAAATAAAAGGCAAGTTTATGATGTCTATGGTATGGAAGGGTTGAAATCTGGTTTGGAACTTGGTCCGAGTTTGGATAAAGCTGAAGAGATTAAAGCGGAATTGGATAGATTGAAGAGAATGAGGGAGCAGGAAAAGAGGGCGGCACGGATACAATCTTCGGGGACGATTATGTCTAATATGTCTTTGCCACAGTATCTAGATGGTGATGGCCTCTTCAAAGGAATGGCAATGACAAGTGAAATTCAGTCTCAGTTGTCAAAACGAAGCGTAGCTGTGATTGGCGGAAATTTAGCAGTTGATGGACATGTAGGTGGCGGAGCTGCTAATGCTGTATTAAGTCATCAACTTTCAGAAGCTTCGTCAATAGAATTTATGGCGTCAGCTGGTTTACGTTCATTACTTGGGGTTCAGACATCTCGGCATATATCATCACACTCATCTGCAACAGCAGGCTTAACAATGTCTTTGAAAGATGGTTCATTGAATCTTTCTAATGCATGGACCCGCCAACTGTCAGATACAACAAACGGAAGTATACAACTCTTGTTGGGATCACAGTCATCTGTAGCCGTAGGGTGGCAGAAAAAAGATGAGAGAAGGACTGCCTCTGGAGAAGTGAAGGTTCTTTTGAGACATCAAATTGGGAGTTCTTCCATTGAGATGGAAGTTGGTGGTGGAAGGAAGTTATCAAAATTCAGTACTGTGCGCTGGTTGTATGTAGTAGGAATTCAGGGTGTTTCCTGGAGATTTGAACTCTATCGCGGGGGGCAGAAGCTGGTTGTTCCTATTTTGCTGACGGATTGTTTGAATCCCGTGTTTGCTACTGGAGCATTTGTTATTCCAGCATCTTTTTACTTGGTTCTGAAGAAATTTTTCATTAAACCGTATTACCTTAAAAGGAATAAGCAGAAGGCTTTGGAGAAGGAGGGGAAAAGTTCTGCTCAGGTTCAGGAAGGAAGGGCTGCAGCTGAAAAAGCTCAGAAATTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAATGGAAGGACTGGTTATTATGAAAGCGTTATATGGAAGTGATACAATTTTGAACAACTTGTATTCGTCAAATGAAACGAGTTTTGAATCTACTTCAGGAGTCATCGATGTTACGACACCTCTGAACTTTCTAGTTAATGATTCTGGTCAACTTAAGCTTCACGAAGGTGTAAAGAAATCAGGAATCATGGGCTTTTGTGATCCCTGTCCAGGAGAGCGCAAACTGTTATATGTAGAATATGCTTATGCCAGCAATCAACACAAGGTCTTGGTTGGTGACTATGAAGAATTACTGATGCCCCAAGGCATCCATAGGCTATAA 1560 0.4205 MAEPKEEQDSRELYAVLNLSPEASDEEIRKAYRQWAQLYHPDKYQSPNLKDAATENFQRVCEAYEILSDPNKRQVYDVYGMEGLKSGLELGPSLDKAEEIKAELDRLKRMREQEKRAARIQSSGTIMSNMSLPQYLDGDGLFKGMAMTSEIQSQLSKRSVAVIGGNLAVDGHVGGGAANAVLSHQLSEASSIEFMASAGLRSLLGVQTSRHISSHSSATAGLTMSLKDGSLNLSNAWTRQLSDTTNGSIQLLLGSQSSVAVGWQKKDERRTASGEVKVLLRHQIGSSSIEMEVGGGRKLSKFSTVRWLYVVGIQGVSWRFELYRGGQKLVVPILLTDCLNPVFATGAFVIPASFYLVLKKFFIKPYYLKRNKQKALEKEGKSSAQVQEGRAAAEKAQKLQQNVANRKRNKQLEMEGLVIMKALYGSDTILNNLYSSNETSFESTSGVIDVTTPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGERKLLYVEYAYASNQHKVLVGDYEELLMPQGIHRL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07726 519 Coils Coil 94 117 - -
Vifa1g07726 519 Pfam DnaJ domain 13 77 IPR001623 -
Vifa1g07726 519 SUPERFAMILY Chaperone J-domain 9 91 IPR036869 -
Vifa1g07726 519 Pfam DnaJ-like protein C11, C-terminal 365 513 IPR024586 -
Vifa1g07726 519 PRINTS DnaJ domain signature 14 32 IPR001623 -
Vifa1g07726 519 PRINTS DnaJ domain signature 32 47 IPR001623 -
Vifa1g07726 519 PRINTS DnaJ domain signature 52 72 IPR001623 -
Vifa1g07726 519 PRINTS DnaJ domain signature 72 91 IPR001623 -
Vifa1g07726 519 PANTHER CHAPERONE PROTEIN DNAJ 13 1 278 IPR042162 -
Vifa1g07726 519 CDD DnaJ 12 69 IPR001623 -
Vifa1g07726 519 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Vifa1g07726 519 SMART dnaj_3 11 72 IPR001623 -
Vifa1g07726 519 Gene3D DnaJ domain 2 91 IPR036869 -
Vifa1g07726 519 ProSiteProfiles dnaJ domain profile. 12 80 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07726 Vifa-Chr1 1201970302 1201979111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07726 14 79 C2H2 Transcription Factor Family AT1G74250 47.059 4.16e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07726 K09531 - gmx:100817782 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07726 1 1201970302 1201979111 Vifa1g07726 1 1201970302 1201979111 ECH