Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07719 ATGGAGGAGTACAAATGCAAACTTTGTACAAGATCATTCATCAGTGGCAGAGCACTCGGTGGCCACATGAAAGCTCATCTAGCCATCCTCCCTCACCACCACCGTACTCCTCCCTCTTCTTATTCAGATGAAAATCTGTCAGATCCTAAGTTTTCTTTCTCAACAAAAACAGAGTACATTCTTCATGACAGAGAGAGTGAAACTGAGTCAAAACACCCGACTCAGAAACGATCCAACCGAAACAGAAACTCAGAACAAAAGAAGCTTAAACAGAGTTTAATAGCTTCGCATTCACCACAAACACCGGTTAGTTCCATTTCCGAAACTTCTCCGGAAGAAGAACTTGCTAAAACTCTCATGATGCTATCAAGAGATCAATGGAACACCGACGTTGCTGTCAAAGAAGAATCACAAGAAGTTGAAAGATCAATGGAAGATATCAAGTTCAGAGAAGTTAGTAGGAGGCGTAAATGCTACGAATGTGGACAGAACTTTCCAAGTTCAACAGCAGTTAAAAGTCACAAAAACATTTGTCTTCAAAATGAACCTGCAACAACAAGTGGCGGTGATCATAAAATATTCAAATGTTTGGTTTGTTCTAAGGTCTTTGGTTCTGGTCAAGCACTAGGTGGTCACAAGAAATCTCACCTTCATAAGAAAAAACTCTGTTTCATCGATCTCAACTTGCCACCTTCGCTACAAGAAAACCATGATCGCATCAACTAG 726 0.4063 MEEYKCKLCTRSFISGRALGGHMKAHLAILPHHHRTPPSSYSDENLSDPKFSFSTKTEYILHDRESETESKHPTQKRSNRNRNSEQKKLKQSLIASHSPQTPVSSISETSPEEELAKTLMMLSRDQWNTDVAVKEESQEVERSMEDIKFREVSRRRKCYECGQNFPSSTAVKSHKNICLQNEPATTSGGDHKIFKCLVCSKVFGSGQALGGHKKSHLHKKKLCFIDLNLPPSLQENHDRIN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07719 241 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Vifa1g07719 241 Gene3D Classic Zinc Finger 154 216 - -
Vifa1g07719 241 Pfam C2H2-type zinc finger 194 217 - -
Vifa1g07719 241 Pfam C2H2-type zinc finger 4 28 - -
Vifa1g07719 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vifa1g07719 241 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 236 IPR044303 GO:0006355
Vifa1g07719 241 SMART c2h2final6 4 26 IPR013087 -
Vifa1g07719 241 SMART c2h2final6 194 216 IPR013087 -
Vifa1g07719 241 SMART c2h2final6 156 176 IPR013087 -
Vifa1g07719 241 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vifa1g07719 241 MobiDBLite consensus disorder prediction 88 112 - -
Vifa1g07719 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Vifa1g07719 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Vifa1g07719 241 SUPERFAMILY beta-beta-alpha zinc fingers 187 222 IPR036236 -
Vifa1g07719 241 ProSitePatterns Zinc finger C2H2 type domain signature. 196 218 IPR013087 -
Vifa1g07719 241 MobiDBLite consensus disorder prediction 62 114 - -
Vifa1g07719 241 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07719 Vifa-Chr1 1200446902 1200447627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07719 1 236 C2H2 Transcription Factor Family AT3G60580 37.895 2.13e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g07719 zf-C2H2_6 9.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07719 - - psat:127120612 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07719 1 1200446902 1200447627 Vifa4g02914 4 936186124 936187065 PCT