Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07705 ATGCCAATAGAAATATCTTTTAGCCCGAACACACGCAATGGAGCCGTAAACAGTCAAGTGAAATCCAATTCACGAAATCGTTTGATTTCTGGACAGCATCATTGTGGTAAAGGGCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGCAATGAAAAAGACATATATGGTAGAATTGTAACTATCGAATACGACCCTAATCGAAATGCACACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTATTTATGGTACAAAAGTTCATATAAAAATGGGAAATGCCCTACCTTTGAGTGCGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGACGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATAACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGTAAATCAGCAACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGCAGAGCCGGAGCTAAACTTTGGCGAGGCAAGCGTCCTGTAGTAAGAGGGGTAGTTATGAACCCTGTAGACCATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCTCAACTCCTTGGGGGTATCCTGCACTTGGAAGAAGAACTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTCAATAG 897 0.4292 MPIEISFSPNTRNGAVNSQVKSNSRNRLISGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAHICLIHYGDGEKRYILHPRGAIIGDTIIYGTKVHIKMGNALPLSAPYALEEACTVWEGVLIDQKDESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGAKLWRGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPSTPWGYPALGRRTRKRKKYSDNLILRRRSQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07705 298 PANTHER RIBOSOMAL PROTEIN L2 30 297 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 Pfam Ribosomal Proteins L2, C-terminal domain 156 273 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 Hamap 50S ribosomal protein L2 [rplB]. 1 297 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa1g07705 298 SUPERFAMILY Nucleic acid-binding proteins 15 121 IPR012340 -
Vifa1g07705 298 Gene3D - 19 113 IPR012340 -
Vifa1g07705 298 FunFam 50S ribosomal protein L2 218 298 - -
Vifa1g07705 298 Pfam Ribosomal Proteins L2, RNA binding domain 38 113 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 Gene3D Ribosomal protein L2, domain 3 219 297 IPR014726 -
Vifa1g07705 298 SMART Ribosomal_L2_2 38 114 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 NCBIfam 50S ribosomal protein L2 155 297 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Vifa1g07705 298 SMART Ribosomal_L2_C_2 120 275 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 SUPERFAMILY Translation proteins SH3-like domain 156 295 IPR008991 -
Vifa1g07705 298 MobiDBLite consensus disorder prediction 249 298 - -
Vifa1g07705 298 FunFam 50S ribosomal protein L2, chloroplastic 143 218 - -
Vifa1g07705 298 Gene3D - 114 218 IPR014722 -
Vifa1g07705 298 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 131 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 153 298 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 ProSitePatterns Ribosomal protein L2 signature. 240 251 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vifa1g07705 298 FunFam 50S ribosomal protein L2, chloroplastic 2 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07705 Vifa-Chr1 1197013848 1197015371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07705 49 257 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 32.579 7.20e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07705 K02886 - cave:30215254 502.671