Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07679 ATGGAACAGGTTCATGTCCCTGTAGAAAACGCAATTCAACTAACCACTTCCATTTCTTCTTCCTCCATTGAAGATAATAACAATAACAAAACCAAACCCAAAGGTGATGGAAAACACCCATTATACCGTGGAGTTCGAATGCGTCACTGGGGAAAATGGGTTTCAGAAATTCGAGAGCCCAAGAAAAAATCCAGAATCTGGCTCGGTACTTTTCCATCACCAGAAATGGCGGCCCGAGCCCACGACGCTGCGGCCCAAGCCATCAAAGGTAGCTCGGCTTACCTCAATTTCCCCGAGTTAGCCGACCAACTTCCACGCCCGGCTACTAATTCTCCTAAGGATATTCAAGCCGTCGCCGCTAAAGCAGCTGCCATGGGCTATCTCCATGAACCCCAGGCCCAGTCCCAGGCCCATGTTGAGGAGGATGACATGTTTTATGACCTCCCTGATCTGTTACTCTATTCGAATAAGAACTCAAGTGAGCTTCATTACTCTGAGCCGTGGCTTGTGGCTGGAGCTGAACATCCAAGCTCGGGCTTTGGGCTGGATGAGCCATTCCCGTGGAAGCCATACTAA 576 0.4948 MEQVHVPVENAIQLTTSISSSSIEDNNNNKTKPKGDGKHPLYRGVRMRHWGKWVSEIREPKKKSRIWLGTFPSPEMAARAHDAAAQAIKGSSAYLNFPELADQLPRPATNSPKDIQAVAAKAAAMGYLHEPQAQSQAHVEEDDMFYDLPDLLLYSNKNSSELHYSEPWLVAGAEHPSSGFGLDEPFPWKPY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07679 191 MobiDBLite consensus disorder prediction 17 42 - -
Vifa1g07679 191 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Vifa1g07679 191 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Vifa1g07679 191 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Vifa1g07679 191 CDD AP2 40 100 IPR001471 GO:0003700|GO:0006355
Vifa1g07679 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 151 - -
Vifa1g07679 191 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Vifa1g07679 191 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
Vifa1g07679 191 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Vifa1g07679 191 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Vifa1g07679 191 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07679 Vifa-Chr1 1196487736 1196488311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07679 30 186 AP2-EREBP Transcription Factor Family AT2G44940 44.928 1.98e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g07679 AP2 7.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07679 - - cam:101496929 235.728