Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07674 ATGACAGTTGAAAAAGAAGATTTGGGTTTGAGCCTAAGCTTAAACTTTCCTCAAAATCCACCAAAACCTCAATACCTTAATCTCATGTCTTCTTCAACTCATTCCTCTTCTCCTTCCACCTACAATCCTCACAAACCTTCATGGATCAATGCTTTCACTTCTTCAGATCGGGATTCAGAACCATGCAGAGCCGGTGAAGAACGACCGTTACTCCTCCGAGGAATCGACGTCAACCGGTTGCCTTCCGACGCTAACTGTGAAGAAGAAGCAGGCGTTTCATCTCCAAACAGCACGGTTTCGAGCGTGAGCGGTAAACGAAGCGAAAGAGAAATCACTGGTGAAGATCTTGACATGGAGAGAGATTGTTCAAGAGGAATCAGTGATGAAGAAGACGCTGAAACTTCCAGAAAAAAACTCAGACTCACCAAAGACCAATCTATTATCCTCGAAGAGAGTTTCAAAGAACACAACACTCTTAACCCCAAACAAAAATTAGCACTTGCAAAACAATTGGGTCTTCGTGCAAGACAAGTTGAAGTGTGGTTTCAAAATCGTAGAGCAAGGACTAAATTGAAGCAAACGGAGGTAGATTGTGAGTTTTTGAAGCGATGTTGTGAGAATCTAACGGATGAGAATCGGCGGTTGCAAAAAGAAGTACAAGAGCTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCAAATGACACCACCTACAACACTTACCATGTGCCCTTCTTGTGAGCGTGTGGCTGTTCCATCATCAGCCGTTGATGCTGCCACGCGTCGTCATCCTATGGCTCCGAATCATACTCGATCGTTTCCTATGTATCCAACGGTTCAGCATAGGCCGTTTGATACACTCCGTCCTAGTAGATCTTAA 882 0.4422 MTVEKEDLGLSLSLNFPQNPPKPQYLNLMSSSTHSSSPSTYNPHKPSWINAFTSSDRDSEPCRAGEERPLLLRGIDVNRLPSDANCEEEAGVSSPNSTVSSVSGKRSEREITGEDLDMERDCSRGISDEEDAETSRKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSSAVDAATRRHPMAPNHTRSFPMYPTVQHRPFDTLRPSRS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07674 293 Pfam HD-ZIP protein N terminus 3 110 IPR006712 GO:0005634
Vifa1g07674 293 Gene3D - 140 190 - -
Vifa1g07674 293 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Vifa1g07674 293 MobiDBLite consensus disorder prediction 107 137 - -
Vifa1g07674 293 SMART HOX_1 134 196 IPR001356 GO:0003677
Vifa1g07674 293 MobiDBLite consensus disorder prediction 1 44 - -
Vifa1g07674 293 MobiDBLite consensus disorder prediction 12 44 - -
Vifa1g07674 293 FunFam Homeobox-leucine zipper protein 18 122 197 - -
Vifa1g07674 293 Coils Coil 191 228 - -
Vifa1g07674 293 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Vifa1g07674 293 MobiDBLite consensus disorder prediction 266 293 - -
Vifa1g07674 293 MobiDBLite consensus disorder prediction 86 137 - -
Vifa1g07674 293 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Vifa1g07674 293 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Vifa1g07674 293 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Vifa1g07674 293 CDD homeodomain 136 193 IPR001356 GO:0003677
Vifa1g07674 293 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 264 - -
Vifa1g07674 293 MobiDBLite consensus disorder prediction 89 106 - -
Vifa1g07674 293 SUPERFAMILY Homeodomain-like 127 193 IPR009057 -
Vifa1g07674 293 PRINTS Lambda-repressor HTH signature 163 172 IPR000047 GO:0003677
Vifa1g07674 293 PRINTS Lambda-repressor HTH signature 172 188 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07674 Vifa-Chr1 1194299075 1194300252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07674 1 290 Homeobox Transcription Factor Family AT4G17460 57.655 2.90e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g07674 HD-ZIP_N 9.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07674 K09338 - gmx:100813367 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07674 1 1194299075 1194300252 Vifa4g02887 4 924071334 924072341 PCT