Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07668 ATGTACGGAGAGAATGTTTACGAAACCTTAGATTCTATTAAGCTTCAATTGCTCGGAGATTCCGATGTTTTTACATTCGGAGCTTCGTTTAATGTTCCAGTTTTTTGTGGGAGCTTCAGTTTCAACAAATTGTACCCATGTATGAGTGAGAGTTGGGGAGAACTTCCTCTCAAAGAAGATGATTCAGAGGATATGCTACTCTACGGTGTACTTCGTGATGCTGTTAATGTTGGGTGGGTTCCATCTCTCGACGGAGCTTCACCGGAGAGTTTTTCGTCGTGTTTCATGCCGTCGGAGATAGTAAAGTCAGAGCCGGATGTTTTTCCGGTGGTGAAGAGTGTGTCTGAGAATGTTGTTCCTGCTCCGGCGAAGGGTAAGCATTACCGGGGAGTGAGGCGACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACCCGGTTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTTGAAACGGCTGAGGATGCGGCTTTGGCTTATGATCGAGCTGCGTACAGGATGCGTGGCTCGCGGGCTATATTGAATTTTCCGGATCGGGTTAATTCGGGTGAGCCCGAGCCGGTTAGAGTACCTTCGAAGCGATTTTCGGCGTCGGAGTTGTCTTCTTCGTCGTCGGAGAGTGGGTCGTCGGTGAAACGGAGGAAGAAGGTGGTGGAGCCAATTGTGAAAGCTCAAGCTGGATTGAAAATGGTGCAAGTGGAAAACCAGGTGATACAATGCACACGTGGAGATAAATTATTGGCCAGTGAAGTGTAA 780 0.491 MYGENVYETLDSIKLQLLGDSDVFTFGASFNVPVFCGSFSFNKLYPCMSESWGELPLKEDDSEDMLLYGVLRDAVNVGWVPSLDGASPESFSSCFMPSEIVKSEPDVFPVVKSVSENVVPAPAKGKHYRGVRRRPWGKFAAEIRDPVKNGARVWLGTFETAEDAALAYDRAAYRMRGSRAILNFPDRVNSGEPEPVRVPSKRFSASELSSSSSESGSSVKRRKKVVEPIVKAQAGLKMVQVENQVIQCTRGDKLLASEV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07668 259 Gene3D AP2/ERF domain 126 187 IPR036955 GO:0003700|GO:0006355
Vifa1g07668 259 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Vifa1g07668 259 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Vifa1g07668 259 PANTHER DNA-BINDING DOMAIN 121 218 IPR044808 GO:0003700|GO:0009873
Vifa1g07668 259 MobiDBLite consensus disorder prediction 186 223 - -
Vifa1g07668 259 Pfam AP2 domain 127 177 IPR001471 GO:0003700|GO:0006355
Vifa1g07668 259 FunFam Ethylene-responsive transcription factor 2 126 186 - -
Vifa1g07668 259 SUPERFAMILY DNA-binding domain 127 187 IPR016177 GO:0003677
Vifa1g07668 259 CDD AP2 126 186 IPR001471 GO:0003700|GO:0006355
Vifa1g07668 259 ProSiteProfiles AP2/ERF domain profile. 127 185 IPR001471 GO:0003700|GO:0006355
Vifa1g07668 259 SMART rav1_2 127 191 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07668 Vifa-Chr1 1192740972 1192741751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07668 7 255 AP2-EREBP Transcription Factor Family AT4G17500 50.903 4.97e-78 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa1g07668 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07668 K09286 - gmx:100819649 290.812