Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07667 ATGGCTTCCTCTACCCTTTACATGATTTTCATTCTCTTTCTTCAACTTATGTTAGTCCATGGAAACATTGCTCCAATCTCAACACTCACTGCCACCACCAACAATAACAATTCATGGCTATCACCTTCTGGTGAATTCGCCTTCGGGTTTCGCCAACTTAACACCTCAACAAACCCTTTCATGCTTGCAATATGGTACAACAAAATACCTGATAAAACCGTTGTTTGGACTGCCAGAGACACAAACAACAATAACAATCTCTTACAAGTACCAACGGGATCAAAGATTCAGTTAACATCAGGAGGACTTACTTTGACAACTCCACAAGATATGACCATTTGGACAGCACAGCCAAACGCTGTCGTTTCCTATGGAAACATGCTTGACACCGGAAACTTTGTTCTTGTAAACAACATTTCAACTGTTTGGGAAAGTTTCAAGTTGCCTACTGATACCCTTTTGCCTAATCAATCTCTTGGGTTAAGTAACACCTTAACTTCAAGATTATCAGAGAACAACTTTACAAGTGGAAGGTTCCAGCTTTATTTTAATGGTGCTGATAAAAATCTCATGTTAAGTCCACTTGCATGGCCTACTCAATTTCGTTACGATTCTTACTATAAAATTGATGTTCCTAACTCGGCTTCTTCGAGTTTGGTTTTTAATGAATCAGGAGATGTTTATGTGGAAACAAATAATGGGACTAGAATGAAACCACAGGGTGCACAGTGGGGCAATTTGGATTCTGATCCTAAGTTGTATTATTATAGAGCAACGCTTGATTATTATGGAGTTTTCACTCAATATTCTCATCCAAGAGATACAAAGGCAAAGCAAGATTGGACTATTGTGAGGTATGTTCCTGAGAACATTTGCAATGATGTGGACTATGAAATGGGTGGTGGTTCTTGTGGTTATAATAGCTATTGCTCCATGGACAATCAGAGACCTACTTGTAAATGTCCTTATGGTTACTCACTGGTAGATCCGAGTAATCGATTTGGTGGGTGTCAACTGAACTTCACACTTGGTTGTGGAGCTGATAATGGTGAAGGATTGAATGTGAGGCTAGAAGATTTATATGAGTTTACTGAACTTAAAGGTGTAAATTGGCCTTTATCAGATTATGGAAGGCTGCAACCTTATTCTCAACAGGAGTGTCAACAATCTTGTTTGCATGATTGTTTGTGTGCTGTTGCTGTTTTCAATGACCAAACTTGTTGGAAGAAAAAATCGCCTCTTGTCAATGGAAGAGAAGAAAATGGTGACCATATAGTACTTATTAAAACAAGAGTTTCTCCTCTTGGTAAAATAGGTACTGGTTCTTACACTGACTTGACAAAAGACGATGTTAATCGGACTCTTCGAGGACTACTTATTGGTTCAGCAGTCTTCAATAGCATATTCTTGGCTGTGATTGTTTTCGTCATTTTGTTGAAGCCGAAAAGGGTTGTTGTCCAAGGTGCAACTCTCTTGGAAACAAATTTATGTTCCTTTAGTTATGAAGCATTAAAAGAAGCTACGCAGGGTTTTAATGAAGAACTAGGTAGAGGTTCCTTTGGAATTGTTTACAAAGGTGAATTAAAAGCAGCATCATCTAGTAATGTTGTTGCTGTTAAGAGATTGGATCGGTTAGCACAAGACCGCGATAAGGAATTCAAGACCGAGTTGAGTGCCATTGGTAAAACCTGCCACAAAAACTTGGTAAGGTTGATTGGATTTTGTGATGAGGGAATCCATAGAATGTTGGTGTATGAGTTCATGAGCAATGGTAGTCTTGCAGATATCTTGTTTGGACAATCCAAACCCAAGTGGAATCAAAGGGTTGGATTTGCTTTGGGGATTGCAAGAGGGTTGGTGTACTTACATGAAGAGTGTGACACTCCCATCATTCACTGTGACATAAAGCCTCAAAATATACTCATAGATGAGTACTTTACAGCTAAGATCTCTGATTTTGGACTGGCCAAGTTATTGTTGGCTGATCAGAGTAGAACAAATACAATGATCCGCGGAACGCGGGGTTATGTGGCTCCTGAATGGTTCAAGAATGTTCCTGTGACAGCTAAAGTGGATGTTTACAGCTTTGGCTCCATGTTGTTGGAAATTGTTTGCTGCAGAAAAAGTGTGGTGCTGATGGAGCCAGGGGAGGAAGAGAAGACAATTTTGGCAGATTGGGCTTGTAATTGCTATATGGAAGGGAGAATAGATGCTCTTGTGGAGAATGACCAAGAGGCCTTGGATGACATTGGAAGGCTAGAAAAGTGGATAAAGATAGCAATTTGGTGCATTCTTGAGCATCCTGAAACAAGGCCAACGATGAGGATGGTCGTGCAAATGCTAGAAGGTGTTGTTCAAGTCCCTAATCCACCATCACCTTTCTCCTACAGTTCAATTCCTTGA 2403 0.3999 MASSTLYMIFILFLQLMLVHGNIAPISTLTATTNNNNSWLSPSGEFAFGFRQLNTSTNPFMLAIWYNKIPDKTVVWTARDTNNNNNLLQVPTGSKIQLTSGGLTLTTPQDMTIWTAQPNAVVSYGNMLDTGNFVLVNNISTVWESFKLPTDTLLPNQSLGLSNTLTSRLSENNFTSGRFQLYFNGADKNLMLSPLAWPTQFRYDSYYKIDVPNSASSSLVFNESGDVYVETNNGTRMKPQGAQWGNLDSDPKLYYYRATLDYYGVFTQYSHPRDTKAKQDWTIVRYVPENICNDVDYEMGGGSCGYNSYCSMDNQRPTCKCPYGYSLVDPSNRFGGCQLNFTLGCGADNGEGLNVRLEDLYEFTELKGVNWPLSDYGRLQPYSQQECQQSCLHDCLCAVAVFNDQTCWKKKSPLVNGREENGDHIVLIKTRVSPLGKIGTGSYTDLTKDDVNRTLRGLLIGSAVFNSIFLAVIVFVILLKPKRVVVQGATLLETNLCSFSYEALKEATQGFNEELGRGSFGIVYKGELKAASSSNVVAVKRLDRLAQDRDKEFKTELSAIGKTCHKNLVRLIGFCDEGIHRMLVYEFMSNGSLADILFGQSKPKWNQRVGFALGIARGLVYLHEECDTPIIHCDIKPQNILIDEYFTAKISDFGLAKLLLADQSRTNTMIRGTRGYVAPEWFKNVPVTAKVDVYSFGSMLLEIVCCRKSVVLMEPGEEEKTILADWACNCYMEGRIDALVENDQEALDDIGRLEKWIKIAIWCILEHPETRPTMRMVVQMLEGVVQVPNPPSPFSYSSIP 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07667 800 Gene3D Phosphorylase Kinase; domain 1 478 587 - -
Vifa1g07667 800 CDD STKc_IRAK 515 783 - -
Vifa1g07667 800 Pfam D-mannose binding lectin 73 164 IPR001480 -
Vifa1g07667 800 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 29 793 - -
Vifa1g07667 800 ProSitePatterns Protein kinases ATP-binding region signature. 515 540 IPR017441 GO:0005524
Vifa1g07667 800 ProSiteProfiles Protein kinase domain profile. 509 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07667 800 SMART serkin_6 511 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07667 800 FunFam S-receptor-like serine/threonine-protein kinase 480 587 - -
Vifa1g07667 800 SUPERFAMILY Protein kinase-like (PK-like) 494 782 IPR011009 -
Vifa1g07667 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Vifa1g07667 800 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 789 - -
Vifa1g07667 800 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 199 IPR036426 -
Vifa1g07667 800 SMART blect_4 30 149 IPR001480 -
Vifa1g07667 800 Gene3D Transferase(Phosphotransferase) domain 1 588 787 - -
Vifa1g07667 800 PIRSF SRK 1 799 IPR024171 GO:0004674
Vifa1g07667 800 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 18 147 - -
Vifa1g07667 800 Gene3D - 27 147 IPR036426 -
Vifa1g07667 800 Pfam PAN-like domain 362 416 IPR003609 -
Vifa1g07667 800 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Vifa1g07667 800 Pfam Protein kinase domain 512 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07667 Vifa-Chr1 1192236305 1192238707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07667 454 791 Receptor kinase-like Gene Family AT3G53380 37.960 1.51e-65 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g07667 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07667 - - lja:Lj2g3v1989170.1 1070.46