Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07655 ATGGGTAAACAAGGACCTTGCCATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCAGAGAAGCCAATACTATGCAATGCTTGCGGTTCTCGGTGGAGGACAAAGGGAACACTTGCAAATTATACGCCTTTACATGCTCGAGCTGAAACTGATGATTTTGATGATCAAAGGCATTCCAGGGTTAAGAGCATCTCGTTAAATAAGAACAAAGAAATGAAATTGCTCAAACGGAAGCCATACCATGATAATGTAGCATCTGGTGGGATTGCATACGATTACAACCAGGGATTCCTAAAGGCTGTTGATGAAGATATGAGCAACCGATCAAGTTCGGGGTCAGCCTTGTCTAACTCAGGAAGCTGTGCACAATTTGGCGGAACAGATGCTAGTGATCTGACAGGACCTGCTCAGTCAGTGACCTGGGATGCCACAGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTGCAAACCATTCTTCTGTAGAGGAGTTCACAAAAGAGTTGTGCTCTATTCTTCATGAACAACAATCATATTTTTCTGCATCTTCTGAAGAGGAACTTCTTTACGAAAATGAAGCACCAATGGTCTCAGTTGAGATAGGACATGGAAGTATGCTCATTAGGCATCCTAGCTATGTAGCTCGCGACGAAGAGTCTGAGGCTAGCTCTCTTTCATTTGATAATAGGCAATACCCGATGAGTGACACATATTCTTATTCTGGTGCCATTCCTATGCATAATGGTTCCAGTCACACAAACTTCTCATGTCAGGGAGCTGAAAAGGCAAGGAACTCAGTTTTCCAGGGAATGAAGCAGGAGCAACTTAAAAGTGACAAGTCTCAGCTTGAAAGAGCGCAAATCCTTGGAAATCATGATTCACCCCTGTCTGAAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGAGAATCTTGACTAATGAAGAGCAGCAGCAATTACTGAAGTTTCTTCCCGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAGTTCATGTTCGAGAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTTCCGAAGGTGTCTTTGATATCTCTTTGTCGGGGGCAAAACCTGAAGACTGCAAGACTTTGATAAGATATGCACTGTCTAATCTGTCAAAGTCAAAATGGGCGGAACACTACCATCATATCAAGAGATGTAAAAGTAGAGCTGAAAAATCTGATACTTCAGGGTCTGCTGGTATAGCATCGACCAATGTTGCAAACATGAAAAGAATGCGTGATAGCAGAAATCAGAATTTTCCAGAGGTAAAGACAATAATGAGGAGCCCCAAAAGAATGATCACAAAGTCTGGTTATGAGGGAAAAGTTAAAGATGCTGGCAGTTTCTATAATCCAAAAAGCCTATTTCCTTTGCCTCCTGATGCTAGCTCAAATTTGCTAGATTCTTTTATCTTTGTGGAGGACAGTTCTGATCAGGATCTGCTTCTTGAAGTGCCTTCTAATAATTCTTTTCCACAGGCAGAACTATTGCACCCAACTTTGAGCTTTGGTGCTCAAGCAAGCACTAGTAGTAGCTCAGCATACTCACATCTTGTGAAGCATTAA 1620 0.4185 MGKQGPCHHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARAETDDFDDQRHSRVKSISLNKNKEMKLLKRKPYHDNVASGGIAYDYNQGFLKAVDEDMSNRSSSGSALSNSGSCAQFGGTDASDLTGPAQSVTWDATVPSKKRTCVGRANHSSVEEFTKELCSILHEQQSYFSASSEEELLYENEAPMVSVEIGHGSMLIRHPSYVARDEESEASSLSFDNRQYPMSDTYSYSGAIPMHNGSSHTNFSCQGAEKARNSVFQGMKQEQLKSDKSQLERAQILGNHDSPLSEIDLNDVVNYEEFLRILTNEEQQQLLKFLPVVDTAKLPDSLKFMFESSQFKENLTYFQQLLSEGVFDISLSGAKPEDCKTLIRYALSNLSKSKWAEHYHHIKRCKSRAEKSDTSGSAGIASTNVANMKRMRDSRNQNFPEVKTIMRSPKRMITKSGYEGKVKDAGSFYNPKSLFPLPPDASSNLLDSFIFVEDSSDQDLLLEVPSNNSFPQAELLHPTLSFGAQASTSSSSAYSHLVKH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07655 539 Pfam Asx homology domain 282 375 IPR028020 -
Vifa1g07655 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Vifa1g07655 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 537 IPR044589 -
Vifa1g07655 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Vifa1g07655 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 295 407 IPR044867 -
Vifa1g07655 539 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Vifa1g07655 539 Gene3D - 3 82 IPR013088 GO:0006355|GO:0008270
Vifa1g07655 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Vifa1g07655 539 Gene3D - 277 380 IPR038108 -
Vifa1g07655 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Vifa1g07655 539 FunFam GATA transcription factor 27 3 85 - -
Vifa1g07655 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07655 Vifa-Chr1 1188991145 1188994883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07655 1 516 C2C2-Gata Transcription Factor Family AT4G17570 51.032 9.15e-154 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa1g07655 ASXH 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07655 - - gmx:100798504 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07655 1 1188991145 1188994883 Vifa4g02859 4 911845361 911849201 PCT