Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07654 ATGACAACATCAATGTCAGTGTGTAATGAACAATTTGAAGAAGAGTTTGGGAAGCCGTTGATGGAACTTGGAGACTCTACTATGGTTGCTCGGCCTAAGTTTAAGTGCCGTAAAATTTGTGCTGTTCGTGATTATCCGGAAGGTTGTGGACCGTTTGGTTCGGCTGATGCTACAAGTGTTGAGGATAAGAGTAACAAAGATTTGGAGGTTGATGCTGTTAGTCCTGAACATCATAATGATTCTCAATATTCCGAGCATGAAGATAATTTGGTAGTTGCGGAGACTCTTGAGCAAACGAGTGACTGTAGTTTGAAGAAGGAAGTTCCTGTGATTTTGTCTGATCAAGTGGCGTTGGTTGGCATGGAAACTTTGGGTGCGGAATTTGCTACAGAAAGCTCTAATTTGAAGAAGGAAGATCCTGTGATTTTGTCTGATCAAGTGGTATTGGCGGGCATGGAAACTTTGGGTGCAGAATTTGCTACAGAAAGCTCTAGTTTGAAGAAGGAAGTTCCTGTGATCTTGTCTGATCAAGTGGCATTGGTGGGCATGGAAACTTTGGGTGCAGAGTTGGCTACAGAAAGCTCTAGTTTGAAAAAGGAAGTTCCTGTGGTTTCATCTCATCTAGTGGATGGACCCATTTTGGATAATGACGAACATGCAAATGTGGCGTTGGTGGGCATGGAAACTTTGGGCGGGGAATCTGTGGCAGAAATCAGTAGTTTGAAGAAGGAAAACCCAATGGTTTCATCCCATAAAGTGGATGGGTCTACTTTGGCTAATGATGAACCAGCTAAAGTGACATTGGTGGGCACGGAAACTTTGGATATGGAATTTGCAATACAAGACTCTGTAAAACAAGATTCCTTATATATGTCAAAGGCATCGTCTCCTGTTGGTGAGTCAGCTATGTCCGATGACTCAAAATCCTCTTCGTCCAATATCAATATAGGTGGTTCCGGGGCTTGTATGGAGGAGGCTGTAACTAAAAGGTATCCTCCTCGTAGAAATTTTGCAGCAGTCAGAGACTTTCCACGTTTTTGTGGGCGCAATGCTCCCCGTCTTACTAAGGACGAGCTCTCTTCTCTGAATGAAAAGAGAGCGGCAGGTCAACAAAATTTGGCTGTAGATGCCAGTCTGTTGAAAAAAGTTGCAGACACTGATGCAAAAGAAATGGAAAATAACAAGAGAAAGACCGTTAACATCGTTCAAGCTGGCTCTGAAGAAGAGAATAATGCTGCGCAGAGAGTCAAGAAGCCGGATGTATTTGAACCATCTTCTGAGATGAAACTGGCACCGGATAACACAAGAGAAAAGAGCACTAAACTTCCCGAAAAACGTAATCATCATCAGGTTAACATAAATTCCAAGGCAGTGGCTAAAGAGGAAATTATGAACACTGTACAGGTCGAGGGAACATCAGGGCTAGATATTTACTGCCCAGAAGTCCAAAGTCCTGAGACAAAACCTTTGGCTATATCAAGAGAGGAAGTAGTGCTAGGTTTGAAGTCTAAATCAGAATGTCCTTGGAGATCTCAAGTTAGTTCTTCGAAATCTAAACCAGCATCAATAGGTGGTACAGAAGAAAAGAAGGCAAAGAAAGTTGATTTTTATGCCCAGCTAGACAGGTCTAAAACTGCTGTCAAGACGAAAGATATACGGAGTCATTCTGGGCACGAGCCATTGAAAAAGAAAAAACTAAACTCCACTTCTGATGATGACATGGGTCAACTAGTAAGACGGGAGAAGAATTCTCTAGACCCTAATGAAAATAACAAAGTCTTTAAAAGTGTCCCAAAATCACATGGTTCGAGTGTCCCAAAATCTTTGAGTGTCCCAAGATCGAGTGTTGTTGTTCCTCCTATTGGCTGTAGTAATTTTAGTGGTCACGAGAATGACTCAGCGACTCGGAATGAAGTGAGGAAAGTATTGCGCCTGTTCCAAGCTGTTTCTAGAAAGCTTTTGCATGAAGCGGAAGCAAAAGCAAAGTCAAATGAAAAAGAAAGAAAAAGGGTTGATTTACAAGCTGCTAAGATACTTAAGGAGAACGGAAACTTTGTTAACACAGGGAAGCATATATTGGGACCTGTACCCGGGGTTGAAGTTGGTGATGAATTTCAATACAGAGTAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATACAAAGCACAATAATAAGGTCCTTGCAACTAGTATTGTTGCGTCGGGGGGTTATGCTGATGATTTGGATAATACAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGGTAAAGAGCCAGAAGATCAGAAACTTGAAAGGGGCAATCTTGCATTGAAGAACAGTAGTGAGGTAAAGAATCCTGTTAGGGTGATACGAGGCTCTGAATCACCGGATGGAAAAAGTAAGATATATGTTTATGATGGGCTGTATCTAGTTGAGTCAACTTGGCAGGATATGGGGACCCATGGGAAGCTGGTTTATAGGTTTCGCTTGCGAAGAATCCCGGGTCAACCGGAGCTTGCCTTGAAGGAAGTGAAAAAATCTAATAAGTTCAAAACAAGAGAAGGTCGATGCGTGGAAGATATTTCCTGCGGGAAAGAGAGAATTCCCATATGTGCTGTGAACACCATAGACGACGAGAAACCCCCTCCATTTAAATACATAAAGAAGATGATATATCCTGATTGTATCAACCTTGTCCCTCCAGAAGGCTGTGGTTGTACTAATGGATGCTCGGACCGTGCAAAATGTTCTTGTGTTCGAAAAAACGGAGGGGAGATTCCATTTAATTATAATGGGGCTATTGTAGAAGCAAAGCCTCTAGTCTACGAGTGCGGGCCTAAATGCAAGTGCCCTTCAACCTGCTATAACAGAGTTAGCCAACATGGGATTAATATCCAACTCGAAATTTTTAAAACCAATTCAAGGGGATGGGGTGTTAGATCCCTAAATTCCATCGCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGCTTCTTGAAGACAAGGAAGCTGAACAAAGAACTGGCAATGATGAGTATCTTTTTGATATTGGAAATAAAAACAACAGTACTCTTTGGGACGGACTTTCGACCCTTTTGCCCGATTCACAGTCACATTCTTGTGAAGTAGTGAAGGATGTTGGCTTCACTATTGATGCTGCTCAATATGGTAACGTGGGGAGATTTGTCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAACAGGGTTCCTCACGTCATGTTGTTTGCTGCCGAGAACATTCCTCCCTTGCAAGAGCTGACTTACGACTACAATTACATGATAGATGAAGTTTGTGATTCCGATGGCAACGTCAAAAAGAAGTCCTGCTATTGTGGTTCTGTGGATTGTACTGGTAGGTTGTATTGA 3429 0.4208 MTTSMSVCNEQFEEEFGKPLMELGDSTMVARPKFKCRKICAVRDYPEGCGPFGSADATSVEDKSNKDLEVDAVSPEHHNDSQYSEHEDNLVVAETLEQTSDCSLKKEVPVILSDQVALVGMETLGAEFATESSNLKKEDPVILSDQVVLAGMETLGAEFATESSSLKKEVPVILSDQVALVGMETLGAELATESSSLKKEVPVVSSHLVDGPILDNDEHANVALVGMETLGGESVAEISSLKKENPMVSSHKVDGSTLANDEPAKVTLVGTETLDMEFAIQDSVKQDSLYMSKASSPVGESAMSDDSKSSSSNINIGGSGACMEEAVTKRYPPRRNFAAVRDFPRFCGRNAPRLTKDELSSLNEKRAAGQQNLAVDASLLKKVADTDAKEMENNKRKTVNIVQAGSEEENNAAQRVKKPDVFEPSSEMKLAPDNTREKSTKLPEKRNHHQVNINSKAVAKEEIMNTVQVEGTSGLDIYCPEVQSPETKPLAISREEVVLGLKSKSECPWRSQVSSSKSKPASIGGTEEKKAKKVDFYAQLDRSKTAVKTKDIRSHSGHEPLKKKKLNSTSDDDMGQLVRREKNSLDPNENNKVFKSVPKSHGSSVPKSLSVPRSSVVVPPIGCSNFSGHENDSATRNEVRKVLRLFQAVSRKLLHEAEAKAKSNEKERKRVDLQAAKILKENGNFVNTGKHILGPVPGVEVGDEFQYRVELNIIGLHRQIQGGIDYTKHNNKVLATSIVASGGYADDLDNTDVLIYTGQGGNVMSSGKEPEDQKLERGNLALKNSSEVKNPVRVIRGSESPDGKSKIYVYDGLYLVESTWQDMGTHGKLVYRFRLRRIPGQPELALKEVKKSNKFKTREGRCVEDISCGKERIPICAVNTIDDEKPPPFKYIKKMIYPDCINLVPPEGCGCTNGCSDRAKCSCVRKNGGEIPFNYNGAIVEAKPLVYECGPKCKCPSTCYNRVSQHGINIQLEIFKTNSRGWGVRSLNSIASGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNKNNSTLWDGLSTLLPDSQSHSCEVVKDVGFTIDAAQYGNVGRFVNHSCSPNLYAQNVLYDHHDNRVPHVMLFAAENIPPLQELTYDYNYMIDEVCDSDGNVKKKSCYCGSVDCTGRLY 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07654 1142 ProSiteProfiles Pre-SET domain profile. 907 967 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 296 316 - -
Vifa1g07654 1142 SMART preset_2 863 954 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 545 611 - -
Vifa1g07654 1142 ProSiteProfiles SET domain profile. 970 1112 IPR001214 GO:0005515
Vifa1g07654 1142 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 276 1142 IPR025794 GO:0016571
Vifa1g07654 1142 Coils Coil 654 674 - -
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 545 588 - -
Vifa1g07654 1142 Gene3D SET domain 858 1142 IPR046341 -
Vifa1g07654 1142 Pfam SAD/SRA domain 693 841 IPR003105 -
Vifa1g07654 1142 Pfam SET domain 981 1112 IPR001214 GO:0005515
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 508 531 - -
Vifa1g07654 1142 Gene3D - 676 857 IPR036987 -
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 508 522 - -
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 589 611 - -
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 411 447 - -
Vifa1g07654 1142 SUPERFAMILY SET domain 853 1113 IPR046341 -
Vifa1g07654 1142 CDD SET_AtSUVH-like 887 1113 - -
Vifa1g07654 1142 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 502 1135 - -
Vifa1g07654 1142 ProSiteProfiles YDG domain profile. 694 837 IPR003105 -
Vifa1g07654 1142 ProSiteProfiles Post-SET domain profile. 1126 1142 IPR003616 -
Vifa1g07654 1142 SMART set_7 970 1118 IPR001214 GO:0005515
Vifa1g07654 1142 Pfam Pre-SET motif 866 962 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa1g07654 1142 SUPERFAMILY PUA domain-like 675 850 IPR015947 -
Vifa1g07654 1142 SMART G9a_1 689 841 IPR003105 -
Vifa1g07654 1142 MobiDBLite consensus disorder prediction 406 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07654 Vifa-Chr1 1188971673 1188975101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07654 630 1141 Su(var)3-9 homologs AT5G04940 40.566 3.95e-117 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g07654 SAD_SRA 4.8e-50 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07654 K11420 - gmx:100803378 1133.24