Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07653 ATGAAACTTAATTTTAAGAGCCAAATTGGTTTTGTTTCTTTCATAATATTGCTCTTACCTATCCTGTGTAACTCTCAAGACTCTTATATTTTCTCTAGAGCAACCTATTATGGTAGCCCAGATTGCTATGGAAATCCAAGGGGAGCTTGTGGCTATGGTGATTATGGACAGACAGTAAATGATGGCAATGTTGCAGGAGTGTCTTGGTTATGGAAGAACGGATCGGGTTGCGGGGCATGCTACCAAGTGAGGTGCAAAATAGCAGGATTGTGTGATGAGAATGGAGCATATGTTGTGGTGACTGATTATGGTGTGGGAGATAGGACAGACTTCATCATGAGTCCGCGTGGCTATTCGAGATTGGGCAAAAATTCTGATGCATCTGCAGAACTTTTTAAATATGGTGTGGTGGATATAGAATATAAAAGAGTTCCTTGCAAATATAATGGTTATAATGTGTTGGTAAAGGTACATGAACGTAGCGAATACCCTCACTACTTGGCCATTATCATTCTCTATGTTGGTGGAAGAATTGATGTAACTGGTATTCAATTGTGGCAGGAGGATTATCAAGAGTGGAGGCCAATGCGTAGGGTGTTTGGGGCAGTGTTTGATGCTGAGAACCCTCCAAGAGATGGGATCAAGTTGAGGCTCCAAGTGAGTGGTAGTGCTGGTCTTTATTGGGTGCAGTCCAAGAATGTCATCTCTAGTGATTGGGAAGCTGGTGCTGTTTATGACTCACAAATTCAGTTTGATTAA 759 0.4177 MKLNFKSQIGFVSFIILLLPILCNSQDSYIFSRATYYGSPDCYGNPRGACGYGDYGQTVNDGNVAGVSWLWKNGSGCGACYQVRCKIAGLCDENGAYVVVTDYGVGDRTDFIMSPRGYSRLGKNSDASAELFKYGVVDIEYKRVPCKYNGYNVLVKVHERSEYPHYLAIIILYVGGRIDVTGIQLWQEDYQEWRPMRRVFGAVFDAENPPRDGIKLRLQVSGSAGLYWVQSKNVISSDWEAGAVYDSQIQFD 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07653 252 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Vifa1g07653 252 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Vifa1g07653 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Vifa1g07653 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vifa1g07653 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vifa1g07653 252 Pfam Lytic transglycolase 64 141 IPR009009 -
Vifa1g07653 252 SUPERFAMILY PHL pollen allergen 152 247 IPR036749 -
Vifa1g07653 252 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Vifa1g07653 252 PANTHER EXPANSIN-B3 16 251 - -
Vifa1g07653 252 Pfam Expansin C-terminal domain 155 235 IPR007117 -
Vifa1g07653 252 Gene3D - 22 146 IPR036908 -
Vifa1g07653 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 247 IPR007117 -
Vifa1g07653 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Vifa1g07653 252 CDD DPBB_EXLB_N 32 146 - -
Vifa1g07653 252 Gene3D - 147 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07653 Vifa-Chr1 1188969158 1188970666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07653 1 249 Expansin Gene Family AT4G17030 57.600 1.30e-105 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07653 - - ccaj:109800044 422.935