Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07648 ATGAATTTTCAACAACTTCCACATCTCTTTCTACAACAGATTCCTAATTTGAGAAATTCCAGTGTAATCAAGAGTAATATTATGAAGGAAGAGACTAAATGTGCACAAATGACAATCTTTTATGATGGGAAAGTAGTTGTATTGGATGATATTCCAGCTGAAAAGGCCAAGGATATTATGGTCTTTTCTGCCAGCAACTATGTTCAAGAACATCCTAAAGTAGCATCCACGCCTGTTATTTATGACTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCAAGGGGACCATATCAAACAAGTAATCCAACACTGAGTCTTAATAAGCCAATTGATGAACATATGTCATGGCTTTCTCTCGCCCCACAATCACCGCAAGATTTCAAATCTGAGTGTTGCTCTACCTCTGTCTTACTTTAA 450 0.3733 MNFQQLPHLFLQQIPNLRNSSVIKSNIMKEETKCAQMTIFYDGKVVVLDDIPAEKAKDIMVFSASNYVQEHPKVASTPVIYDLPMTRKASLHRFLEKRKDRIAARGPYQTSNPTLSLNKPIDEHMSWLSLAPQSPQDFKSECCSTSVLL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07648 149 Pfam tify domain 35 60 IPR010399 -
Vifa1g07648 149 Pfam Jas motif 84 109 IPR018467 -
Vifa1g07648 149 SMART tify_2 30 65 IPR010399 -
Vifa1g07648 149 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 30 113 IPR040390 -
Vifa1g07648 149 ProSiteProfiles Tify domain profile. 30 65 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07648 Vifa-Chr1 1187602120 1187602832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07648 28 131 Tify Gene Family AT1G19180 35.338 1.00e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vifa1g07648 tify 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07648 K13464 - mtr:112421766 190.274