Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07646 ATGGAGGAAGAACGTTACGAGATATTGAAAGATCTTGGTTCAGGGAACTTTGGTGTGGCTAGGTTGGCCAAACACATCACAACAGGAGAGCTTGTTGCTATCAAATACATTGAAAGAGGATATAAGATTAATGAGAATGTTCAAAGAGAGATAATTAACCATCAATCTTTAAACCATCCAAATATCATCAAGTTCAAAGAGGTATTTGTCACACCTACTCATTTGGCTATTGTTCTTGAGTATGCTGCTGGTGGTGAGCTTTTTGATAGAATATATTCGGCTGGTCGACTCAGTGAAGACGAGGCAAGATATTTTTTCCAGCAACTAATATCTGGAGTTAGCTACTGTCATTCTATGCAAATTTGTCATAGAGACTTGAAATTGGAAAACATTCTATTGGATGGAAACCCAGTTCCTCGACTTAAGATTTGCGACTTTGGTTTTTCCAAGAATACTTTACTTCACTCTCAACCCAAATCAACAGTTGGAACACCTGCATACGTTGCACCTGAGGTTTTGTCTCAAAAGGAGTATGATGGAAAGATTGCAGATGTATGGTCATGTGGTGTAACTCTTTATGTCATGTTGGTTGGATCATACCCGTTTGAAGAACCAGATGATCCTAGAAATTTCAAGAAAAATATTGCAAAAATAATGAACGTGGAATACTCTATACCTGGATATGTACGTATATCTTCAGATTGTAGTCAACTTTTGTCTCGTATTTTTGTTGCCAATCCAACTAAGAGGATTACGGTGTTAGAGATTAAACAACACCCTTGGTTTCAGAAGAACATACCTAAAGAATTGGTTGAGAGTGATAGGAAATGTTGCAAGGAAATAGAAAAAGAAAAAATATCAAAACAACACGAAGAAATTATGAGGATTGTAAGAGAAGCAATGAATCCATGTCCATCTTCTTCATTAGATGTTGCTGATGTTGATGAAATTGAAGAGGTTGAATAG 966 0.3654 MEEERYEILKDLGSGNFGVARLAKHITTGELVAIKYIERGYKINENVQREIINHQSLNHPNIIKFKEVFVTPTHLAIVLEYAAGGELFDRIYSAGRLSEDEARYFFQQLISGVSYCHSMQICHRDLKLENILLDGNPVPRLKICDFGFSKNTLLHSQPKSTVGTPAYVAPEVLSQKEYDGKIADVWSCGVTLYVMLVGSYPFEEPDDPRNFKKNIAKIMNVEYSIPGYVRISSDCSQLLSRIFVANPTKRITVLEIKQHPWFQKNIPKELVESDRKCCKEIEKEKISKQHEEIMRIVREAMNPCPSSSLDVADVDEIEEVE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07646 321 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Vifa1g07646 321 SUPERFAMILY Protein kinase-like (PK-like) 4 283 IPR011009 -
Vifa1g07646 321 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07646 321 FunFam Serine/threonine-protein kinase SRK2E 82 270 - -
Vifa1g07646 321 FunFam Aurora kinase A 1 85 - -
Vifa1g07646 321 Gene3D Transferase(Phosphotransferase) domain 1 82 270 - -
Vifa1g07646 321 PANTHER SERINE/THREONINE KINASE 4 285 - -
Vifa1g07646 321 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vifa1g07646 321 SMART serkin_6 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07646 321 Pfam Protein kinase domain 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07646 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07646 Vifa-Chr1 1187362928 1187364762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07646 5 272 CBL-interacting serine-threonine protein kinases AT4G24400 44.245 7.67e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa1g07646 Pkinase 5.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07646 K14498 - gmx:100817713 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07646 1 1187362928 1187364762 Vifa4g02834 4 906663736 906666025 PCT