Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07644 ATGGGAAGCAGAAAGCAAGAAGAGAAGATTGAGAAGATTATTAGGGGGCTTATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCTCAGTATGCATGTACAACTTTTTGGACCTTTGTTTGCATAACTTGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCAGTGTCAATGTCAAAGTTCACTTTGCAAGAAGTTGATGCTCTTCAAAATGGCGGTAATCAGCGTGCAAGGGAAATATATTTGAAAAATTGGGACTTCCAAAAACAACGGTGGCCAGATAGCAGCAACGTTGATAAAGTAAGGGAGTTCATAAGGAATGTATATGTGGATAAACGATATGCTGGAACAAAGTCATCTGAAAAGCCTCCAAGAGATGCACAGAGCCCCACAATTCATGACGACGAGATTAGACGTGCCAGTTCTTATCATTCATATTCACAAAGTCCTCCATATGATAATCAATATGAGGATCGGCGCTATGGAAAGCAAGCAGGGGCTCTGACGAGAAAGCCTGGTTCAGATAAAGTCCGTTATGAAGGGAAGATGTCTAGTATTATCTATAGTCCGGGTCGTTTCAGTGATCACACATATGATGAAAGGTTTGCAAATGAGGGATCTGGTCCACGAAATTCCGACTTTTCCGTGTCTAGTGGTCATGAGCAATTCAAAACCGATGTTCAGTCTCCTCAGTTTCATAAGGACATTGAGTTTAACAGCCCATCTCATAGGCGTCCTGGTTCTAGTTCAAGCGAAGATGTGTGGTCTCAAGCAAAAAAGGCAGCTCTTGAATCTAATGCTTCTCCCAAGAGAGATGCAGATGGAATTCGTCATCCGCAGAGAACTACATCATTGCAACCAACAGACAACAACTTTTCAAACTTAAGATCTTACAATTCTGGCAGTTCAATTGATTTTTTCTCGGAAGCTGTCCAATCTTCAGGGTCCCTTCAAGATAAAGCATCAGGAATTTCACTGCCATCTGGTCCTGCAAGATCTGTTAGCTTAGATCTTTCCAAGGCGCCAGTGGCATCAGCTTCACCTGCTGTTCTTTCTCAAACAGCTGCACCATCTCAAGCTCCATTGGGAGATCTATTTCAATTATCTGATACGGCAGCAGTTACATCTTTCAAGGAAAATCAACCTACACAAATATCCCAAGTCGCATCCATTGATTTCTTTGTGGAGGCTACTACAACATCTGATGCAAAATCAGGGGAGATATCCATCCCTAAAAATGAAGGGTGGGCAACATTTGATATGCCTCAATTCACATCTGCACAAGTGGAAACTCATGCAGCAGTACCTTTAAGTGCTGAACCTTTGCAGGATAGATTTGATCCATTTTCAACCTTGAATGATAATATGCATTGGCCATCTTTTGAAATTTCTTGTGTTGGTGTACCTCCTGTTGCATCTGATGTATGGCATGACGGTGTATGGAATAAAGAAAAACAAGTTCCTGTTGTGGCTACAGACACTCAATCATGGAATGCATTTGAAGATTCTGGTACACATTTTCCTGTGGATGGCAGTAGTCAAGGATTAAATTTGCACTATTTTCCATCAGAGATTTCTGGTTTAAGTGCTCCTGAGGGGCCCAATAAAGATGCAATCCAAGGCGTTGCTCCTATTGGAGGTTTTGATAATCATGTAATCCCATCACACGGAGATACTCAACCTAATGGAATCAGTCGTAAATCAACTAATCCATTTGATTTTCCCTTTAATTCTGATGTAGAGCAGAGCAATATGTTCCTTGATATGGGCTCTCTGCAAGCTGCTCTTCCAGATGCCCTCTTACCAGCCGCATTTGGTGGTATCCCTGAACCCTGGCTCCCTCAAAATACAATGACACCATATATTTCTTCTGCAGGTGAAGGTGGTTTATCATTCATGGCCGTGCAAACACCAAGTTCTCACTTACAGAACATCCAAGTACAAGAACCAGTTGCTTCGATTGGCGGAAATCCTTTTGCATAG 2004 0.4207 MGSRKQEEKIEKIIRGLMKLPPNRRCINCNSLGPQYACTTFWTFVCITCSGIHREFTHRVKSVSMSKFTLQEVDALQNGGNQRAREIYLKNWDFQKQRWPDSSNVDKVREFIRNVYVDKRYAGTKSSEKPPRDAQSPTIHDDEIRRASSYHSYSQSPPYDNQYEDRRYGKQAGALTRKPGSDKVRYEGKMSSIIYSPGRFSDHTYDERFANEGSGPRNSDFSVSSGHEQFKTDVQSPQFHKDIEFNSPSHRRPGSSSSEDVWSQAKKAALESNASPKRDADGIRHPQRTTSLQPTDNNFSNLRSYNSGSSIDFFSEAVQSSGSLQDKASGISLPSGPARSVSLDLSKAPVASASPAVLSQTAAPSQAPLGDLFQLSDTAAVTSFKENQPTQISQVASIDFFVEATTTSDAKSGEISIPKNEGWATFDMPQFTSAQVETHAAVPLSAEPLQDRFDPFSTLNDNMHWPSFEISCVGVPPVASDVWHDGVWNKEKQVPVVATDTQSWNAFEDSGTHFPVDGSSQGLNLHYFPSEISGLSAPEGPNKDAIQGVAPIGGFDNHVIPSHGDTQPNGISRKSTNPFDFPFNSDVEQSNMFLDMGSLQAALPDALLPAAFGGIPEPWLPQNTMTPYISSAGEGGLSFMAVQTPSSHLQNIQVQEPVASIGGNPFA 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07644 667 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Vifa1g07644 667 MobiDBLite consensus disorder prediction 134 148 - -
Vifa1g07644 667 MobiDBLite consensus disorder prediction 234 248 - -
Vifa1g07644 667 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Vifa1g07644 667 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vifa1g07644 667 PANTHER ARFGAP/RECO-RELATED 1 667 IPR044820 GO:0005096
Vifa1g07644 667 MobiDBLite consensus disorder prediction 249 263 - -
Vifa1g07644 667 CDD ArfGap_AGFG 11 121 - -
Vifa1g07644 667 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Vifa1g07644 667 MobiDBLite consensus disorder prediction 215 233 - -
Vifa1g07644 667 MobiDBLite consensus disorder prediction 286 301 - -
Vifa1g07644 667 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Vifa1g07644 667 MobiDBLite consensus disorder prediction 122 164 - -
Vifa1g07644 667 MobiDBLite consensus disorder prediction 205 301 - -
Vifa1g07644 667 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Vifa1g07644 667 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vifa1g07644 667 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vifa1g07644 667 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07644 Vifa-Chr1 1186766511 1186773205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07644 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 9.41e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07644 K15044 - gmx:100794964 907.516