Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07637 ATGACCAACTTCATTTCAAAGAATAAAGCTGCACAGATCCAACATGGTTCAAGCCACACCTCTAATACTAACCACCCTAGACTGATATTTGGATGTTGTTTTCCTATGATGTTTGTGACACTTGAATATGCAGAAATTATATTTCTTGGACAACTAAGACATCACCATCTTGTGAAGTTAATTGGATATTGTTGCGAAGATGAACACCGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAGTCAACTATTCAGAACAGGATATTCTGCTGCTATGCCATGGTCAACAAGGATGAAAATTGCATTAGGTGCTGCTAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCTGATTATACAGCCAAATTATCGGATTTTGGCCTAGCTAAAGATGGCCCTGAAGGGGAAGAAACACATGTCACGACGCGCGTAATGGGAACGCATGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACAAAAAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGACAAGTGGTTAGAATCAAAAAGAGGTAAGAGCTTGGTAGAATGGGCAAGACCTATGTTGAGAGATGAAAAGAAACTTGAGAGAATCATAGACCGTAGACTTGAAGGACAGTTTCCTATGAAAGGAGCTTTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTGTATGAGTGATGTTGTTAAGATCTTGGAACCACTTCAAGATTTTGATGATGTTTTTGTAGGTCCATTTGTTTATGTTGCTGTAAGTGAAAATGGTGACAAGGATTAG 900 0.3933 MTNFISKNKAAQIQHGSSHTSNTNHPRLIFGCCFPMMFVTLEYAEIIFLGQLRHHHLVKLIGYCCEDEHRLLVYEYMPRGSLESQLFRTGYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKWLESKRGKSLVEWARPMLRDEKKLERIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPCMSDVVKILEPLQDFDDVFVGPFVYVAVSENGDKD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07637 299 Gene3D Phosphorylase Kinase; domain 1 38 77 - -
Vifa1g07637 299 FunFam Serine/threonine-protein kinase PBS1 77 282 - -
Vifa1g07637 299 Pfam Protein tyrosine and serine/threonine kinase 44 273 IPR001245 GO:0004672|GO:0006468
Vifa1g07637 299 SUPERFAMILY Protein kinase-like (PK-like) 40 273 IPR011009 -
Vifa1g07637 299 PANTHER OS01G0588500 PROTEIN-RELATED 43 277 - -
Vifa1g07637 299 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07637 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vifa1g07637 299 Gene3D Transferase(Phosphotransferase) domain 1 78 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07637 Vifa-Chr1 1185864662 1185866567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07637 45 273 Glycoside Hydrolase AT3G07070 55.411 9.36e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g07637 PK_Tyr_Ser-Thr 1.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07637 - - gmx:100305426 458.373