Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07636 ATGACCAACTTCATTTCAAAGAATAAAGCTGCACAGATCCAACATGGTTCAAGCCACACCTCTAATACTAACCACCCTAGACTGATATTTGGATGTTGTTTTCCTATGATGTTTGTGACACTTGAATATGCAGAAATTATATTTCTTGGACAACTAAGACATCACCATCTTGTGAAGTTAATTGGATATTGTTGCGAAGATGAACACCGGCTTTTGGTGTATGAATACATGCCAAGAGGTAGCTTGGAGAGTCAACTATTCAGAAGATATTCTGCTGCTATGCCATGGTCAACAAGGATGAAAATTGCATTAGGTGCTGCTAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATATAGAGATTTCAAAGCTTCAAATATCTTACTAGACTCTGATTATACAGCCAAATTATCGGATTTTGGCCTAGCTAAAGATGGCCCTGAAGGGGAAGAAACACATGTCACGACGCGCGTAATGGGAACGCATGGTTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACAAAAAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGACAAGTGGTTAGAATCAAAAAGAGGTAAGAGCTTGGTAGAATGGGCAAGACCTATGTTGAGAGATGAAAAGAAACTTGAGAGAATCATAGACCGTAGACTTGAAGGACAGTTTCCTATGAAAGGAGCTTTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTGTATGAGTGATGTTGTTAAGATCTTGGAACCACTTCAAGATTTTGATGATGTTTTTGTAGGTCCATTTGTTTATGTTGCTGTAAGTGAAAATGGTGACAAGGATTAG 897 0.3924 MTNFISKNKAAQIQHGSSHTSNTNHPRLIFGCCFPMMFVTLEYAEIIFLGQLRHHHLVKLIGYCCEDEHRLLVYEYMPRGSLESQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVDKWLESKRGKSLVEWARPMLRDEKKLERIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPCMSDVVKILEPLQDFDDVFVGPFVYVAVSENGDKD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07636 298 Gene3D Transferase(Phosphotransferase) domain 1 78 282 - -
Vifa1g07636 298 FunFam Serine/threonine-protein kinase PBS1 77 281 - -
Vifa1g07636 298 SUPERFAMILY Protein kinase-like (PK-like) 40 272 IPR011009 -
Vifa1g07636 298 Pfam Protein tyrosine and serine/threonine kinase 44 272 IPR001245 GO:0004672|GO:0006468
Vifa1g07636 298 ProSiteProfiles Protein kinase domain profile. 1 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07636 298 PANTHER OS01G0588500 PROTEIN-RELATED 43 276 - -
Vifa1g07636 298 Gene3D Phosphorylase Kinase; domain 1 38 77 - -
Vifa1g07636 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07636 Vifa-Chr1 1185864662 1185866567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07636 45 272 Glycoside Hydrolase AT3G07070 55.411 4.06e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g07636 PK_Tyr_Ser-Thr 9.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07636 - - gmx:100305426 465.307