Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07635 ATGAAGTGTTTCTTCTTCAATAAAAAATCCAAATCAGACCCAAATTTAAACGCTAAAAAGAAGAAGAAAAATTCCACCAGTGCGAATTCATCTCCATCACCAAGAAGCATAAAAGAGATATACAAAGAGAATGAACACAATTTCAGAATTTTCACTGTGCAAGAGCTTGTAAATGCAACAAATGGTTTCAATAAGATGCTGAAAATTGGAGAAGGTGGTTTTGGGAAAGTATATAGAGGCACAATTTCTCCTGAAAATGGAATAGGTGACCAAGTTCTGGTAGCTATAAAAAAACTCAACACTCGTGGACTTCAGGGGCATAAAGAGTGGCTCGCAGAAGTACAATTTTTGGGGATTGTGAACCATCCAAATTTGGTGAAACTTTTGGGATATTGTTCTGTAGATGGTGAAAAGGGGATTCAACGGTTATTAGTATTGCAGATTATGCTTGGTGCTGCTCAAGGGTTACAGTATCTACATGAAGGATTGGAGATTCAGGTGATCTACAGAGATTTTAAATCTTCAAATGTGCTGTTGGACAAGAAATTCCATTCCAAACTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGTGATCAGACTCATGTCTCCACTGCAGTAGTAGGGACAAGGGGTTATGCGGCACCAGAGTATATTGAAACAGGTCACTTAAAATCAAAGAGTGACATTTGGAGTTATGGTGTGGTACTTTATGAGATTCTCACAGGAAGACGAACAATAGAGAGAAATCTTCCGGCAGCGCAACAAAAGCTTATAGAATGGGTTAAAAACTACCCTGCTGATAGTGGCAGATTCACCCTGATAATGGATCCTCGACTCGCGAAACAATATTCTCTTAAAGCAGCTAGGAAAGTTGCTAAGTTGGCAGATAGTTGCTTGAAAAAGAATGCTGAAGATAGGCCATCAATGAGTCAGATTGTTGAAAGCTTGAAACAGGCATTGCAATGTTCATAA 978 0.3926 MKCFFFNKKSKSDPNLNAKKKKKNSTSANSSPSPRSIKEIYKENEHNFRIFTVQELVNATNGFNKMLKIGEGGFGKVYRGTISPENGIGDQVLVAIKKLNTRGLQGHKEWLAEVQFLGIVNHPNLVKLLGYCSVDGEKGIQRLLVLQIMLGAAQGLQYLHEGLEIQVIYRDFKSSNVLLDKKFHSKLSDFGLAREGPTGDQTHVSTAVVGTRGYAAPEYIETGHLKSKSDIWSYGVVLYEILTGRRTIERNLPAAQQKLIEWVKNYPADSGRFTLIMDPRLAKQYSLKAARKVAKLADSCLKKNAEDRPSMSQIVESLKQALQCS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07635 325 ProSitePatterns Protein kinases ATP-binding region signature. 69 98 IPR017441 GO:0005524
Vifa1g07635 325 Pfam Protein tyrosine and serine/threonine kinase 67 137 IPR001245 GO:0004672|GO:0006468
Vifa1g07635 325 Gene3D Transferase(Phosphotransferase) domain 1 138 325 - -
Vifa1g07635 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vifa1g07635 325 Pfam Protein kinase domain 145 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07635 325 ProSiteProfiles Protein kinase domain profile. 63 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07635 325 SUPERFAMILY Protein kinase-like (PK-like) 45 318 IPR011009 -
Vifa1g07635 325 MobiDBLite consensus disorder prediction 21 36 - -
Vifa1g07635 325 PANTHER OS01G0588500 PROTEIN-RELATED 23 322 - -
Vifa1g07635 325 MobiDBLite consensus disorder prediction 6 36 - -
Vifa1g07635 325 Gene3D Phosphorylase Kinase; domain 1 36 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07635 Vifa-Chr1 1185760562 1185762585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07635 3 318 Glycoside Hydrolase AT3G07070 38.095 1.10e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g07635 Pkinase 3.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07635 - - gmx:100305390 511.531