Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07633 ATGGATTACTCAATGAGAATTTCTGATGCATTTGATGAAGAAGACATCAATGATTCAAATAATGGTAATCGATCCTCCAACATGCGTTTTACAATCTATCAGACATCAATACTTGAAAAATACATGGAACAAAATTATCATCCAGATAAGGCCCAACGAAGTCAATTAGCTGAAGAGATTGGGCTTGAGCCCATACAAGTGAAATATTGGTTTCAAAACAGAAGAACTCTAATGAAGAAACAAAATAGTAGAGAAAATAATAATGCTCTGCGTGTTGAGAATGATGATCTTCTTCATGAAAATATTCACTTGAAGGAGGCATTGAAGGCCAAACTTTGCAGAACTTGTGGGGGTCCTCCAGTTGCTTCTAAAGAGCATGAACTTTACATGCAAAATATGGGAGAGCAAAATACCAGACTTAAAGAAGAGGCTAGTGATTTCTTTTCATTGATTATCTTGTTGATTTGA 468 0.3526 MDYSMRISDAFDEEDINDSNNGNRSSNMRFTIYQTSILEKYMEQNYHPDKAQRSQLAEEIGLEPIQVKYWFQNRRTLMKKQNSRENNNALRVENDDLLHENIHLKEALKAKLCRTCGGPPVASKEHELYMQNMGEQNTRLKEEASDFFSLIILLI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07633 155 PRINTS Lambda-repressor HTH signature 61 77 IPR000047 GO:0003677
Vifa1g07633 155 PRINTS Lambda-repressor HTH signature 52 61 IPR000047 GO:0003677
Vifa1g07633 155 Pfam Homeodomain 27 80 IPR001356 GO:0003677
Vifa1g07633 155 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
Vifa1g07633 155 SMART HOX_1 23 85 IPR001356 GO:0003677
Vifa1g07633 155 Coils Coil 80 100 - -
Vifa1g07633 155 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 146 IPR042160 -
Vifa1g07633 155 SUPERFAMILY Homeodomain-like 12 82 IPR009057 -
Vifa1g07633 155 Gene3D - 9 99 - -
Vifa1g07633 155 CDD homeodomain 29 82 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07633 Vifa-Chr1 1185405845 1185406977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07633 29 143 Homeobox Transcription Factor Family AT1G73360 46.957 8.32e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vifa1g07633 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07633 K09338 - mtr:112419334 145.591