Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07629 ATGGCTGTTCAAGCTCAATACCCTTCCAATGTACTCTTTCTTAACACCAAAAACACCCCACAAGATGCTGAATTTAATTTCTCATTACAACAACAACAACAACAACAACAACCTGATCAATCAAATATGATCTTGTTCAACACTCCAGCCACTAACTCTCGAAAAAGAGGAAGAGAACCATCTCATAATATCATGAATCCATTCTCTTCACAATCTCATTCTCCTCATCTCATAGACATCACTCAACTCCACAATCATCAACAACAACAGCAACAACAAATTGTTTCTACCGGTTTAGGTTTATCCTTCGGCGATCAACAACAACAACATCAACAACAAAGACTACAATTGCTGCAGCAGCAACAACAGCAACAACAACATGGGTGTCATACATCTCATTTCTTATCTCTATTGTCTCATGGCCTAGCCTCACAAATCAAACAACAAAAAGACGAAATAGACCAATTTCTTCAAGCTCAGGGAGAAGAGTTACAAAGGACATTAGAGGGAAAAAGACATAGAAACTACCAAGCAATAATAAAAACAGCGGAAGAAACGGTGGCGCGTAGATTAAGAGAAAAAGAAATCGAAGTCGAAAAAGCCACGCGCAGGAACATAGAGTTAGAATCACGCGCCGCCCAGCTTAGAGCCGAATCACAAATTTGGCAAGCAAAAGCAAAAGCGCAGGAAGCAACGGCCATTTCTCTTCAAACGCAGCTGCATCAGGCTATGATGTGCACCGGCGCAGAAAACAGAGGTGAAGAAGGGTGCGGGCTGTCGTGCGCCGCGGAAGATGCGGAATCGGGTTATATTGACCCGGAAAGGGTTCTCTCGGGTCCAAAATGTAGAGGGTGTGGAAAACGGGTTGCGTCGGTTGTGGTGTTACCGTGTCGTCATTTATGTGTTTGCACCGAATGCGACGCGCGTTTCCGTGTTTGTCCCGTTTGTCTCACCGTTAAAAATTCGACGGTTGAGATTTATCTATCTTAG 990 0.4354 MAVQAQYPSNVLFLNTKNTPQDAEFNFSLQQQQQQQQPDQSNMILFNTPATNSRKRGREPSHNIMNPFSSQSHSPHLIDITQLHNHQQQQQQQIVSTGLGLSFGDQQQQHQQQRLQLLQQQQQQQQHGCHTSHFLSLLSHGLASQIKQQKDEIDQFLQAQGEELQRTLEGKRHRNYQAIIKTAEETVARRLREKEIEVEKATRRNIELESRAAQLRAESQIWQAKAKAQEATAISLQTQLHQAMMCTGAENRGEEGCGLSCAAEDAESGYIDPERVLSGPKCRGCGKRVASVVVLPCRHLCVCTECDARFRVCPVCLTVKNSTVEIYLS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07629 329 Coils Coil 184 225 - -
Vifa1g07629 329 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 34 326 IPR017066 -
Vifa1g07629 329 CDD mRING-HC-C3HC5_CGRF1-like 280 316 - -
Vifa1g07629 329 ProSiteProfiles Zinc finger RING-type profile. 282 316 IPR001841 -
Vifa1g07629 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 329 IPR013083 -
Vifa1g07629 329 FunFam Baculoviral IAP repeat containing 7 291 327 - -
Vifa1g07629 329 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 265 328 - -
Vifa1g07629 329 PIRSF SBP1_RNase_bind 1 329 IPR017066 -
Vifa1g07629 329 Pfam Zinc finger, C3HC4 type (RING finger) 281 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07629 Vifa-Chr1 1184342621 1184343786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07629 278 316 C3H Transcription Factor Family AT3G06140 41.860 8.74e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07629 K19042 - gmx:100779548 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07629 1 1184342621 1184343786 Vifa1g07629 1 1184342621 1184343786 ECH
Vifa1g07629 1 1184342621 1184343786 Vifa4g02816 4 898134913 898136235 PCT