Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07624 ATGGATCATTACAAGGTTCTAGGATTACACAAAACAGCATCCAAGGAAGAAATCAAATCCGCATTCAAAAAACTCGCGTTTCAATTTCATCCAGATAAGCATTCTCAATCACCAAAAGCTGTACAAGAGAATGCAACTCTTCGATTCAAACAGGTTTCTGAAGCGTATGAAATTCTCATGGATGATCGGAAACGAGCCGAGTATAATTACCGGTGGCGTTCCGGTGCCGGTGGTAATAGCAATTATTATTACTCTCAGTATGGTTATGGATATGGTAGAAGTGGGAAGAGTTATGAGTATAAAAGTAGGTCTGGGTTTAATGGTGCTGGTGGTTTTGCGTCTAAGTTTGAACTTGCTATTCGGATTTTGACGGCCAGGTCTTCTCTTCTCAATCTTGGATTTGCAGCGGCTATATTAGGTGTGATGATTGTTGTTGACACAAGTGGAGAATCCCTTTGGAAGATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAACACCATTGACAAAGCAAAAGCGTATAAAGAAGATAAGTAA 540 0.3981 MDHYKVLGLHKTASKEEIKSAFKKLAFQFHPDKHSQSPKAVQENATLRFKQVSEAYEILMDDRKRAEYNYRWRSGAGGNSNYYYSQYGYGYGRSGKSYEYKSRSGFNGAGGFASKFELAIRILTARSSLLNLGFAAAILGVMIVVDTSGESLWKMQNSGKSFEEAMNTIDKAKAYKEDK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07624 179 SUPERFAMILY Chaperone J-domain 1 75 IPR036869 -
Vifa1g07624 179 CDD DnaJ 2 61 IPR001623 -
Vifa1g07624 179 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Vifa1g07624 179 FunFam DnaJ domain protein 1 90 - -
Vifa1g07624 179 Gene3D DnaJ domain 1 90 IPR036869 -
Vifa1g07624 179 SMART dnaj_3 1 64 IPR001623 -
Vifa1g07624 179 Pfam DnaJ domain 2 69 IPR001623 -
Vifa1g07624 179 PANTHER CO-CHAPERONE PROTEIN DJLA 4 105 - -
Vifa1g07624 179 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vifa1g07624 179 PRINTS DnaJ domain signature 4 22 IPR001623 -
Vifa1g07624 179 PRINTS DnaJ domain signature 44 64 IPR001623 -
Vifa1g07624 179 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07624 Vifa-Chr1 1183886926 1183889161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07624 3 69 C2H2 Transcription Factor Family AT1G74250 41.791 2.71e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07624 - - gmx:100782769 258.84