Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07613 ATGGTGTCTCAAAGTGGAACAGTTCAAGAGTCAAAGACTACTAGTGCTACACCTTTATCTAGGTCAGGATCTTTGTATAATCTAACCCTGGATGAAGTTCAAAACCATCTTGGTAATTTAGGGAAACCTCTTGGGAGTATGAATCTTGATGAGCTTCTCAAGAGTGTGTGGAGTGTTGAAGCCGGCGAGGTTTCTGATTTCGGTAGAGATGGTGCTGCTAACATGCAGCAGAATCAACTTAGCGAGATGAATCGACAGGGAAGTTTAAGTTTAACGTTATCTGGAGATATTAGTAAGAAGACTGTTGATGAAGTATGGGAAGATATGCAAGTAAAGAAGAGGGGTGTTGATGGGGATAGGGAAGCGCGTGAAAGACAACAAACACTCGGTGAAATGACTTTGGAGGATTTCTTGGTGAAAGCTGGTGTTGTTGGTGAGTCTTTTCATAATAAGGAAGGTGGTGATTTGTTAAGTGTTGATTCCAATGAGGATTCTCGGCAAAATGTTTCACATCATGGTCATCATTGGATGCAATTTCAGCTTCCTTCGACGCAGCAGCCTCCACAGCATCAGCACGAAAAGCATTTGATGCCTTCTTTTATGGCTGTTCATGCCATTCAACAACCTTTTCAAGTTGCAAGGAATCCAGTTTTGGATGCAGCAATGTCACGGTCTTCTTTAATGGGTGCTTTTTCAGATACACAAACACTAGGTCGAAAAAGGGTTGCTTCTGGTATAGTGGTAGAGAAAACTGTGGAGAGGAGGCAAAAGAGGATGATTAAAAATCGGGAATCTGCTGCTCGGTCGCGAGCTAGAAGACAGGCTTATACACAAGAACTGGAACTTAAAGTTTCGCGTTTAGAAGAGGAAAACGAAAGGCTTAGAAGACAGAATGAGATAGAGAAGGAGGTGCCATGTGTGCCACCACCCGAGCCGAAGAATCAGCTTCGCAGAACTAATTCAGCATCCTTCTGA 975 0.4308 MVSQSGTVQESKTTSATPLSRSGSLYNLTLDEVQNHLGNLGKPLGSMNLDELLKSVWSVEAGEVSDFGRDGAANMQQNQLSEMNRQGSLSLTLSGDISKKTVDEVWEDMQVKKRGVDGDREARERQQTLGEMTLEDFLVKAGVVGESFHNKEGGDLLSVDSNEDSRQNVSHHGHHWMQFQLPSTQQPPQHQHEKHLMPSFMAVHAIQQPFQVARNPVLDAAMSRSSLMGAFSDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQNEIEKEVPCVPPPEPKNQLRRTNSASF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07613 324 MobiDBLite consensus disorder prediction 286 302 - -
Vifa1g07613 324 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 322 IPR043452 GO:0003700|GO:0045893
Vifa1g07613 324 SMART brlzneu 250 318 IPR004827 GO:0003700|GO:0006355
Vifa1g07613 324 Gene3D - 252 305 - -
Vifa1g07613 324 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g07613 324 Coils Coil 273 304 - -
Vifa1g07613 324 Pfam bZIP transcription factor 254 299 IPR004827 GO:0003700|GO:0006355
Vifa1g07613 324 SUPERFAMILY Leucine zipper domain 254 301 IPR046347 GO:0003700|GO:0006355
Vifa1g07613 324 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 257 272 IPR004827 GO:0003700|GO:0006355
Vifa1g07613 324 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 252 297 IPR004827 GO:0003700|GO:0006355
Vifa1g07613 324 MobiDBLite consensus disorder prediction 152 173 - -
Vifa1g07613 324 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 252 304 - -
Vifa1g07613 324 MobiDBLite consensus disorder prediction 286 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07613 Vifa-Chr1 1181239953 1181241595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07613 1 324 bZIP Transcription Factor Family AT3G56850 57.927 9.83e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g07613 bZIP_1 3.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07613 K14432 - gmx:100170741 353.214