Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07612 ATGGTGTCTCAAAGTGGAACAGTTCAAGAGTCAAAGACTACTAGTGCTACACCTTTATCTAGGTCAGGATCTTTGTATAATCTAACCCTGGATGAAGTTCAAAACCATCTTGGTAATTTAGGGAAACCTCTTGGGAGTATGAATCTTGATGAGCTTCTCAAGAGTGTGTGGAGTGTTGAAGCCGGCGAGGTTTCTGATTTCGGTAGAGATGGTGCTGCTAACATGCAGCAGAATCAACTTAGCGAGATGAATCGACAGGGAAGTTTAAGTTTAACGTTATCTGGAGATATTAGTAAGAAGACTGTTGATGAAGTATGGGAAGATATGCAAGTAAAGAAGAGGGGTGTTGATGGGGATAGGGAAGCGCGTGAAAGACAACAAACACTCGGTGAAATGACTTTGGAGGATTTCTTGGTGAAAGCTGGTGTTGTTGGTGAGTCTTTTCATAATAAGGAAGGTGGTGATTTGTTAAGTGTTGATTCCAATGAGGATTCTCGGCAAAATGTTTCACATCATGGTCATCATTGGATGCAATTTCAGCTTCCTTCGACGCAGCAGCCTCCACAGCATCAGCACGAAAAGCATTTGATGCCTTCTTTTATGGCTGTTCATGCCATTCAACAACCTTTTCAAGTTGCAAGGAATCCAGTTTTGGATGCAGCAATGTCACGGTCTTCTTTAATGGATACACAAACACTAGGTCGAAAAAGGGTTGCTTCTGGTATAGTGGTAGAGAAAACTGTGGAGAGGAGGCAAAAGAGGATGATTAAAAATCGGGAATCTGCTGCTCGGTCGCGAGCTAGAAGACAGGCTTATACACAAGAACTGGAACTTAAAGTTTCGCGTTTAGAAGAGGAAAACGAAAGGCTTAGAAGACAGAATGAGATAGAGAAGGAGGTGCCATGTGTGCCACCACCCGAGCCGAAGAATCAGCTTCGCAGAACTAATTCAGCATCCTTCTGA 963 0.4309 MVSQSGTVQESKTTSATPLSRSGSLYNLTLDEVQNHLGNLGKPLGSMNLDELLKSVWSVEAGEVSDFGRDGAANMQQNQLSEMNRQGSLSLTLSGDISKKTVDEVWEDMQVKKRGVDGDREARERQQTLGEMTLEDFLVKAGVVGESFHNKEGGDLLSVDSNEDSRQNVSHHGHHWMQFQLPSTQQPPQHQHEKHLMPSFMAVHAIQQPFQVARNPVLDAAMSRSSLMDTQTLGRKRVASGIVVEKTVERRQKRMIKNRESAARSRARRQAYTQELELKVSRLEEENERLRRQNEIEKEVPCVPPPEPKNQLRRTNSASF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07612 320 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 19 318 IPR043452 GO:0003700|GO:0045893
Vifa1g07612 320 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g07612 320 Coils Coil 269 300 - -
Vifa1g07612 320 MobiDBLite consensus disorder prediction 283 320 - -
Vifa1g07612 320 MobiDBLite consensus disorder prediction 283 298 - -
Vifa1g07612 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Vifa1g07612 320 SMART brlzneu 246 314 IPR004827 GO:0003700|GO:0006355
Vifa1g07612 320 Pfam bZIP transcription factor 250 295 IPR004827 GO:0003700|GO:0006355
Vifa1g07612 320 Gene3D - 248 301 - -
Vifa1g07612 320 MobiDBLite consensus disorder prediction 152 173 - -
Vifa1g07612 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700|GO:0006355
Vifa1g07612 320 SUPERFAMILY Leucine zipper domain 250 297 IPR046347 GO:0003700|GO:0006355
Vifa1g07612 320 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07612 Vifa-Chr1 1181239953 1181241595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07612 1 320 bZIP Transcription Factor Family AT3G56850 57.317 1.12e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g07612 bZIP_1 3.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07612 K14432 - gmx:100170741 343.969